Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_G24
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 146 2e-36
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 138 5e-34
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 31 0.19
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 1.7
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.0
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 4.0
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 7.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.3
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 9.3
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 9.3
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 146 bits (355), Expect = 2e-36
Identities = 75/139 (53%), Positives = 89/139 (64%)
Frame = +3
Query: 189 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 368
V KA AQ+ V KG H K RK+R S FRRPKT E R PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 369 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 548
P+ SE+AMKKIED+NTLVF VH ANK IK AVKKLY ++ K+NTLIRP+G KK
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122
Query: 549 XXXXXXXXXXXXXNKIGII 605
N+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 138 bits (335), Expect = 5e-34
Identities = 71/139 (51%), Positives = 86/139 (61%)
Frame = +3
Query: 189 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 368
V KA AQ+ V KG H K +K+R S FRRPKT + R PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 369 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 548
P+ SE+AMKKIED+NTLVF VH ANK IK AV+KLY + K+NTLIRP+G KK
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122
Query: 549 XXXXXXXXXXXXXNKIGII 605
N+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 620 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 504
+W +++ A FV + + +S +RFL ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +1
Query: 370 NSLSRLKQQ*RRLKITTPWSLLFTQVQTSTISRLQSRNSMI*MLLKSTHSSGLMVRRKRT 549
N L +L+ R +K+T+ T + S+++S + + L T + L+ +
Sbjct: 396 NLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSL--DTERADLLAKINEK 453
Query: 550 YDSLEMMTHWTLPTKLASYKLFH 618
+SLE+ H +L +LFH
Sbjct: 454 IESLELEKHDQQKKRLTYSELFH 476
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 353 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 180
+ A + R P R P+ RF+ L S++ + + PY+ P F S + + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255
Query: 179 YFFLSLNPSL 150
S PSL
Sbjct: 256 RRTKSATPSL 265
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 578 QCVIISSESYVRFLLTIRPDECVDFSNIY 492
+C+ I E + FL I+P E V F ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 89 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 178
S+NCQ + +++C EA D D G K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/51 (17%), Positives = 25/51 (49%)
Frame = +3
Query: 348 MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 500
+ A+++ +F E ++ +DN T I H + ++ + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 614 NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 519
++ +NF NV C I +S F IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 635 FYS*KIWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 504
F S +W ++ A F+ + + ++ +RFL +RP +C D+
Sbjct: 503 FVSWCLWITVLVAKFLESYFFLTLNLADSIRFLGAMRPYDCRDY 546
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 222 VKGEHGKRVRKIRNSVHFRRP-----KTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTS 386
++ ++ +R R+ RNS+ + T + P PRK R + ++ + + PL+
Sbjct: 1439 LEDQYLERKRRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRKKTNSGSSLSTPLSQ 1498
Query: 387 EAAMKKIEDNNT 422
E+++ + NT
Sbjct: 1499 ESSLARSGRKNT 1510
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 9.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 111 AWVWQFWLLL 82
+W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 9.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 111 AWVWQFWLLL 82
+W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,394
Number of Sequences: 5004
Number of extensions: 45688
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -