Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_G15
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   2.0  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   2.6  
SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit Apc1...    26   4.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.6  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.1  

>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -1

Query: 564 FLFISSKYTLYCYK*LVHIAFKSGLFLLYSTFTITLLFFYPFQNFLANLGAMNILDIYI 388
           FL ++S Y L   K     AF   LFL+Y   T+ +LFF  F + +   GA  +L  Y+
Sbjct: 709 FLLLTSGYMLASRK----TAFIEPLFLVYYLKTLGILFFETFTSKIE--GANRMLREYV 761


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 528 YK*LVHIAFKSGLFLLYSTFTITLLFFYPFQNFLANLGAMNILD-IYI*GHFYSLHRSK* 352
           Y  L  +AF  GLF+ ++  +  ++ FY  +  L  L   NI   +Y    F++++R   
Sbjct: 306 YVYLAFVAFVQGLFVTFAPLSYPVMSFYGVRGILLKL-IWNIYTFVYYGLPFFAVYR--- 361

Query: 351 LATQFNNSRNAG 316
           L  Q   SR  G
Sbjct: 362 LYKQAGESRKLG 373


>SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit
           Apc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 445 PFSKFSGQSRSYEHFGHIYMRTFLFAPP 362
           PF+  +GQS+SY  FG+++ R  +   P
Sbjct: 3   PFAG-TGQSKSYRTFGNVFQRLSMSGNP 29


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 372 NKNVLIYICPKCS*LLDWP 428
           NK    +ICP C+ L DWP
Sbjct: 11  NKIRSYFICPGCNCLPDWP 29


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 183 IYCVLFHAQKPKANRR*ILRSNAFATTSVSKYSQ 82
           I+CV    +     R  +LRS  +ATT+ +K+S+
Sbjct: 32  IFCVHHRVRYIYVPRHCLLRSLTYATTNFTKFSK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,065
Number of Sequences: 5004
Number of extensions: 44513
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)