Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_G15
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 338  NCVASYLDRWSE*KCPHIY 394
            N +  +L+ WS+  CP IY
Sbjct: 1475 NSITLHLNAWSDGGCPMIY 1493


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = -2

Query: 401 WTYIYEDIFIRSTDPNNWPH 342
           + Y+Y++       P  WPH
Sbjct: 566 YEYVYDEYTCMDCGPGKWPH 585


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/20 (25%), Positives = 10/20 (50%)
 Frame = -2

Query: 401 WTYIYEDIFIRSTDPNNWPH 342
           + Y++++       P  WPH
Sbjct: 476 YEYVHDEYTCMDCGPGKWPH 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,632
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)