Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_G12
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...   118   1e-27
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.58 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   4.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   4.1  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   9.4  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   9.4  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score =  118 bits (283), Expect = 1e-27
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 3/105 (2%)
 Frame = +3

Query: 483 LDFRIGKIVEISKHPDADSLYVEKIDCGE-ENPRTVVSGLVNHVPIDEMRERIVMVLCNL 659
           +DFRIG I +  KHP+ADSLYV  I CG+ E PRTV SGLV ++P+++M++R V+V+ NL
Sbjct: 282 IDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVANL 341

Query: 660 KPVKMRGVTSEAMVMCASSAEK--VEVLIPPPDAIPGDLVVCEGY 788
           KPV MR V S+AMV CASS +K  VE ++PP +A  GD +  EG+
Sbjct: 342 KPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGF 386


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 516 SKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 638
           SK P      ++ IDC EE  + ++  +V  VP+DE+ E +
Sbjct: 807 SKTPQVVGALLD-IDCDEELVQNLLMSVVGQVPVDELVEEV 846



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 70   CHLSCVSICLSQLRNXSIMQLSLKKGXPNY 159
            C  + +  C   LRN  +M++S +KG  +Y
Sbjct: 1560 CFAAILYTCYHLLRNDLVMEISWRKGLQDY 1589


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 513 ISKHPDADSLYVEKID 560
           I K PD +SLY+EK D
Sbjct: 193 IQKEPDLESLYIEKTD 208


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 534  DSLYVEKIDCGEENPRTVVSGLVNHVPI-DEMRERIVMVLCNL 659
            DS ++EK+ C         S L NH+ + D  R+  +  LC+L
Sbjct: 1001 DSWFLEKLPCPLTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHL 1043


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 696 MVMCASSAEKVEVLIPPPD 752
           ++ C   A K  +LIPPPD
Sbjct: 753 LIQCKKPARKTPLLIPPPD 771


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 462 IAVDVRKL-DFRIGKIVEISKHPDADSLYVEKIDC-GEENPRTVVSGLVNHVPI 617
           +A+DV  + D + G  V +  +P+   L +E++     ENP  +++GL   VP+
Sbjct: 316 LAIDVTDVPDVKRGDDVVLWGNPE---LTIEEVSTFSNENPFEIITGLTRRVPL 366


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 379 KNQLSIKRRRKSKILT--KNPKINLVNR 456
           KN+   KRR+ SK+LT   N +I  VNR
Sbjct: 77  KNEHFSKRRKLSKVLTPPTNDEIKFVNR 104


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 617 YWNMIY*TRHNSTWIFFTTVYFFHIQRISIRVFTNLN 507
           +W + Y +R+  T    TT +  H++ I  R+FTN N
Sbjct: 216 FW-VDYMSRYTFTDFSITTNWQLHVEDIYARLFTNHN 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,477
Number of Sequences: 5004
Number of extensions: 52867
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)