Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_G12
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285...   132   2e-31
04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522    119   3e-27
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    86   3e-17
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602...    29   3.2  
02_01_0462 + 3332464-3332470,3333606-3335806                           29   4.3  
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723           28   7.4  

>06_03_0207 -
           17927753-17927983,17928077-17928178,17928273-17928502,
           17929257-17929343,17931263-17931389,17931485-17931628,
           17931920-17931985,17932136-17932254,17932437-17932551,
           17932626-17932732,17932969-17932983,17933810-17933900,
           17934528-17934671,17934750-17934980,17935093-17935248,
           17935330-17935483,17935973-17936117,17936241-17936355
          Length = 792

 Score =  132 bits (320), Expect = 2e-31
 Identities = 66/113 (58%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
 Frame = +3

Query: 456 ADIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRER 635
           A++ V V KLD R+G I +  KHPDADSLYVE+ID GEE PRTVVSGLV  +P++EM+ R
Sbjct: 625 AEVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNR 684

Query: 636 IVMVLCNLKPVKMRGVTSEAMVMCASSAE--KVEVLIPPPDAIPGDLVVCEGY 788
            V VLCNLKPV MRG+ S AMV+ AS+ +  KVE++ PP  A  G+ V   GY
Sbjct: 685 KVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGY 737


>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
          Length = 252

 Score =  119 bits (286), Expect = 3e-27
 Identities = 53/99 (53%), Positives = 76/99 (76%), Gaps = 2/99 (2%)
 Frame = +3

Query: 483 LDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERIVMVLCNLK 662
           LD R+G++V+  +HP+AD+LYVE++D GEE PRT+ SGLVN++PID++++  V+VL NLK
Sbjct: 88  LDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANLK 147

Query: 663 PVKMRGVTSEAMVMCASSA--EKVEVLIPPPDAIPGDLV 773
           P  MRG+ S  M+M AS A  E VE+L PP  ++PG+ V
Sbjct: 148 PRNMRGIKSNGMLMAASDASHENVELLTPPEGSVPGERV 186


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
 Frame = +3

Query: 459 DIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 638
           D   +V  L+ ++G I +  KHP ADSL VE+ID G+ N   VVSGL      +E+  R 
Sbjct: 244 DSECNVSILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELVNRH 303

Query: 639 VMVLCNLKPVKMRGVTSEAMVMCASSAEK--VEVLIPPPDAIPGDLVVCEGY 788
           V+++ N+KP K+R V S  +V+CAS+ +   VE LIPP  A PG+ +   G+
Sbjct: 304 VVLITNVKPGKLRDVMSAGLVLCASNQDHTVVEPLIPPEGAKPGERISFAGF 355


>09_04_0480 +
           17958726-17958926,17959294-17959382,17960176-17960242,
           17960329-17960444,17960978-17961044,17961158-17961206,
           17961630-17961715,17961825-17962078,17962158-17962213,
           17962683-17962768,17963047-17963139,17963790-17964219,
           17964338-17964861,17964962-17965190,17965271-17965566
          Length = 880

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 633 RIVMVLCNLKPVKMRGVTSEAMVMCASSAEKVEVLIPPPDAI 758
           RIV   C++ PV+   V +E +  C  S E ++V    P+ +
Sbjct: 338 RIVYSTCSMNPVENEAVVAEILRRCGDSVELLDVSNELPELV 379


>02_01_0462 + 3332464-3332470,3333606-3335806
          Length = 735

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 225 NNTLSAKVNAAKAELIGLEISHGKRQYAIPGKTDLLETTKIV 350
           N TL A  +AA   L  +++SH     AIP    +L T  ++
Sbjct: 66  NGTLDALYSAAFENLTTIDLSHNNLDGAIPANISMLHTLTVL 107


>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
          Length = 757

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 225 NNTLSAKVNAAKAELIGLEISHGKRQYAIPGKTDLLETTKIV 350
           N TL A  +AA   L  +++SH     AIP    +L T  I+
Sbjct: 77  NGTLDALYSAAFENLTTIDLSHNNLDGAIPANICMLRTLTIL 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,228
Number of Sequences: 37544
Number of extensions: 313203
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)