Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_G11
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0206 + 1487034-1489430                                           32   0.55 
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205...    31   0.97 
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421...    29   5.2  
07_03_0295 - 16345592-16345947,16346265-16346697                       29   5.2  
04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496     29   5.2  
08_02_1598 + 28130385-28130881,28130957-28131269                       28   6.8  
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985     28   6.8  
04_03_0801 - 19828175-19828770,19828913-19828994                       28   6.8  
02_02_0327 - 8983983-8985878                                           28   6.8  
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195...    28   6.8  
05_03_0623 - 16307969-16308323,16308428-16308482,16309413-163095...    28   9.0  
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119...    28   9.0  
03_06_0462 + 34113877-34114463,34117294-34117466,34118049-341182...    28   9.0  
03_03_0169 + 15057492-15057546,15057692-15057999                       28   9.0  

>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +3

Query: 408 WGGAHCTLYVGHDHACRNKCQHPALCVWGPDTSATEAG----STHCVCPGGER 554
           +GG   +L  G D  C  +    A+  WGP   A EAG    S   +  GG R
Sbjct: 136 FGGGFASLVSGDDFTCAVETSTSAVRCWGPRGGAVEAGFLNASVSALAAGGSR 188


>01_05_0607 +
           23619271-23619426,23619479-23619552,23619917-23620594,
           23620711-23620815,23620877-23621003,23621613-23621773,
           23621858-23622028,23622195-23622324,23622532-23622747,
           23626821-23627348
          Length = 781

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 402 GPWGGAHCTLYVG-HDHACRNKCQHPALCVWGPDTSATEAG 521
           GP  G   +   G H   CR + QHP +C +G  T+ + AG
Sbjct: 611 GPLDGPSTSPPTGRHQLRCRIQSQHPRICEFGLSTAVSRAG 651


>12_01_0535 +
           4208410-4208661,4209529-4209627,4210125-4210265,
           4210378-4210560,4210664-4210821,4210905-4211004,
           4211085-4211196,4211241-4211419,4211489-4211674,
           4211762-4211929
          Length = 525

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 1   GHSAVSDDSWRSR-VTDIEQWRNVR 72
           GH + SDDS + R V +IE WR  R
Sbjct: 415 GHHSTSDDSTKYRPVDEIEHWRTAR 439


>07_03_0295 - 16345592-16345947,16346265-16346697
          Length = 262

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 HCTLYVGHDHACRNKCQH 473
           H  L +GH HAC   C+H
Sbjct: 236 HFLLVIGHGHACATTCRH 253


>04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496
          Length = 321

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 315 PAAVPCGASPCDHGGSCVHTEQGEVCECAGPW 410
           PAA   G  PC  G     T     C+C G W
Sbjct: 240 PAAGGGGGGPCTSGQLPNSTSSPSTCDCGGAW 271


>08_02_1598 + 28130385-28130881,28130957-28131269
          Length = 269

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 366 VHTEQGEVCECAGPWGGAHCTLYVGHD 446
           VH   G+    AGPW  AH T Y G D
Sbjct: 30  VHRNHGKFT--AGPWKQAHATFYGGRD 54


>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
          Length = 773

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +3

Query: 342 PCDHGGSC--VHTEQGEVCECAGPWGGAHCTLYVGHDHACRNKCQHPAL--CVWGPDTSA 509
           PC    +C  V+     +C C   + G     Y  +  +  + C HP    C++ P+   
Sbjct: 280 PCGSMSTCNDVYNGTSYICRCNEGYEG---NPYEQNGCSGLDVCAHPERNPCMY-PEYCK 335

Query: 510 TEAGSTHCVCPGG 548
            E G T C CP G
Sbjct: 336 DEQGVTSCACPEG 348


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
 Frame = +3

Query: 315 PAAVPCGASPCDHG----GSCVHTEQGEVCE---CAGPWGGAHCTLYVGHDHACRNKCQH 473
           P  VPC  +  D      G CV       C    C G   G H     G    C+  C  
Sbjct: 134 PYPVPCNKTATDKPKPCCGGCVPPPPRCKCGVDGCGGGCSGGHGGECGGGGGGCKKPCCS 193

Query: 474 PALCVWGP 497
           P  C W P
Sbjct: 194 PPPCPWQP 201


>02_02_0327 - 8983983-8985878
          Length = 631

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +3

Query: 363 CVHTEQGEVCECAGPWGGAHCTLYVGHDHACR---NKCQ-HPA--LCVWGPDTSATEAGS 524
           C  + +G    C G  GG  C    G D + +   N C+ H     C+WG + S   AG 
Sbjct: 449 CTKSARGRTDRCVGHGGGKRCQSS-GCDKSAQGSTNFCKAHGGGKRCLWGHEGSDHGAGD 507

Query: 525 THC 533
           T C
Sbjct: 508 TPC 510


>02_01_0292 +
           1949926-1950037,1950121-1950250,1950551-1950616,
           1950718-1950789,1951198-1951607,1951789-1951994,
           1952121-1952407,1952527-1952665,1952746-1953141
          Length = 605

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -2

Query: 520 PASVALVSGPQTHRAGC*HLL--RQAWSCPTYSVQCAPPHGPAHSQTSPCSVCTHEPPWS 347
           P S+A ++   T R G  HL       S PT       P  PA +  +P S  +H P + 
Sbjct: 115 PDSMAKLNSLSTLRNGN-HLTIPTMPGSSPTPDTIPGSPPTPAAAVAAPRSGASHPPIYV 173

Query: 346 HGLAPHGTAAG 314
               PHG A G
Sbjct: 174 IPATPHGAAQG 184


>05_03_0623 -
           16307969-16308323,16308428-16308482,16309413-16309509,
           16309587-16309592
          Length = 170

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 HQCNRSWIHTLCMSGWRA 553
           HQCN SW+   C S +R+
Sbjct: 66  HQCNNSWMEMHCTSNFRS 83


>04_03_0331 +
           14510848-14511124,14511139-14511528,14511708-14511997,
           14512080-14512154,14512194-14512409,14512727-14512795,
           14512941-14513891
          Length = 755

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 393 ECAGPWGGAHCTLYVGHDHACRNKCQH 473
           +C G   G H  + V  DH  ++ CQH
Sbjct: 625 DCIGAIDGTHIPVQVSKDHLVQHICQH 651


>03_06_0462 +
           34113877-34114463,34117294-34117466,34118049-34118233,
           34118865-34118957
          Length = 345

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 415 PPHGPAHSQTSPCSVCTHEPPWSHGLAPHGTAA 317
           PP GP      P +V  H P    GLAPH   A
Sbjct: 27  PPPGPRDELPPPSAVLVHHP--RGGLAPHPAVA 57


>03_03_0169 + 15057492-15057546,15057692-15057999
          Length = 120

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 553 RSPPGHTQCVDPASVALVSG 494
           R+PPGH + V+ +S A VSG
Sbjct: 78  RAPPGHVRNVEASSAAYVSG 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,304
Number of Sequences: 37544
Number of extensions: 368843
Number of successful extensions: 1265
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)