Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_G11
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 474 PALCVWGPDTSATEAGSTHCV 536
           P L + G + + +E G +HCV
Sbjct: 175 PPLLIMGNEHTYSETGPSHCV 195


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 552 ARHPDIHSVWIQLLLHWCL 496
           A+H +   VW+ +LL W +
Sbjct: 295 AKHKNNRRVWLTILLVWAI 313


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 243 HFNNPSLHTLIK*YH*NNYSNLNEIIYFI 157
           ++NN + +     Y+ NNY+N  ++ Y I
Sbjct: 328 NYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 204 YH*NNYSNLNEIIYF 160
           Y+ NNY+N N+ +Y+
Sbjct: 333 YNNNNYNNYNKKLYY 347


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 249 NIVNSV*NSVMGRKRSKRNSYEPAAVP 329
           NI     +S  GR   K  SY+PA+ P
Sbjct: 867 NIEEEASDSAQGRAILKIPSYKPASTP 893


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 572 LGPLQASLATRTYTVCGSSFCCTGVWS 492
           LGPL   +    Y + GS F C  +W+
Sbjct: 120 LGPLFCQI----YAMLGSLFGCGSIWT 142


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 481 RAGC*HLLRQAWSCPTY 431
           +AG  HLL+  W  P Y
Sbjct: 333 KAGSKHLLQNTWLDPEY 349


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 515 SWIHTLCMSGWRAML 559
           +W HT  + GW A L
Sbjct: 389 TWRHTSVLIGWSAFL 403


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 572 LGPLQASLATRTYTVCGSSFCCTGVWS 492
           LGPL   +    Y + GS F C  +W+
Sbjct: 86  LGPLFCQI----YAMLGSLFGCGSIWT 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,126
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)