Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_G08
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 28 0.70
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 2.8
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 3.7
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 6.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 6.5
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 6.5
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 6.5
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 6.5
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 8.6
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 0.70
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 208 YNVNEAPELFKKFITDYQRQYKDESEYNLRYTYFVQNLKDIIELNAKNKHSSSDINMFAD 387
++ + E KK++ + + Y+++ + NL LN + HS+S+ +
Sbjct: 178 HDAQDIQEKEKKYLEEMEASYQEQRNQTTDDIWSAGNLNHKPTLNTSSTHSNSEESRSPL 237
Query: 388 YSPSELASL 414
+ PSE ASL
Sbjct: 238 HEPSE-ASL 245
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.2 bits (55), Expect = 2.8
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 184 PENLEKPSYNVNEAPELFKKFITDYQRQYKDESEYNLR-YTYFVQNLKDIIELNAKNKHS 360
P +LE S+ + E+ +F S NL ++ +Q +D L+A N+ S
Sbjct: 155 PSSLEHVSFYLQESAVSEVRFDKPSNNGPLGRSSLNLSSLSHELQTSQDSPSLSATNQLS 214
Query: 361 SSDINMFADYSPSELAS 411
SSD Y PS S
Sbjct: 215 SSDTLEPLQYPPSSFGS 231
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 253 DYQRQYKDESEYNLRYTYF-VQNLKDIIELNAKNKHSSSDINMFADYSPSELASL 414
D++ D + Y + + Y + L D L +KH + N +ADYSP ++ +
Sbjct: 737 DFKIPNTDINVYKIHFQYNNISGLADNYTL--LSKHDRAMYNNYADYSPDKIKEI 789
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 109 YDYVNKYDENNGDKKDSESED 171
YD++ ++ +GD DS+S+D
Sbjct: 339 YDHIASHEYGSGDTYDSDSDD 359
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 130 DENNGDKKDSESEDYWGDPENLEKPSYNVNE 222
DEN+ + SE + + D ENL + +++ +E
Sbjct: 767 DENDNESMASEEKPMFSDEENLSEIAHSEDE 797
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 166 EDYWGDPENLEKPSYNVNEAP 228
EDYW P + SY+ E+P
Sbjct: 569 EDYWKSPHPIPPSSYSFVESP 589
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 247 ITDYQRQYKDESEYNLRYTYFVQNLKDIIELNAKNKHSSSDINM 378
+T+Y KD ++ RY Q + DI+ +K+KHS + + +
Sbjct: 20 VTNYLVANKDAADLLRRYHR--QEVADILNATSKSKHSEAVVEI 61
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 202 PSYNVNEAPELFKKFITDYQRQYKDESEYNL 294
PS++ E E+ +KF+ R D+ Y+L
Sbjct: 118 PSFDPAELAEIIRKFVAHENRWVPDQRGYSL 148
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 109 YDYVNKYDEN---NGDKKDSESEDYWGDPENLEKPSYNVNEA 225
Y+ ++ DE+ N +KK+ +SED + D EK + +EA
Sbjct: 42 YESESEEDEDQILNKEKKEGQSEDMFSDTSEDEKRTLPNDEA 83
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 8.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 109 YDYVNKYDENNG---DKKDSESEDYWGDPENLEKPSYNVNEAPELFKK 243
YD K + N + D+E +D+ D ENL+ S N NE E F +
Sbjct: 28 YDPARKNESTNDVIDNHTDTEIDDHDNDHENLD--SNNNNENNEAFNE 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,745
Number of Sequences: 5004
Number of extensions: 35951
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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