Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_G07
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 190 1e-48
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 190 1e-48
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 190 1e-48
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 190 1e-48
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 175 4e-44
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 162 2e-40
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 161 5e-40
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 161 5e-40
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.91
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 28 6.4
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 28 6.4
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 28 8.5
U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical pr... 28 8.5
U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 8.5
AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively... 28 8.5
AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively... 28 8.5
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 28 8.5
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 131 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 307
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 308 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 487
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 488 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 586
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 131 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 307
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 308 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 487
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 488 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 586
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 131 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 307
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 308 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 487
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119
Query: 488 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 586
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 190 bits (463), Expect = 1e-48
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Frame = +2
Query: 131 MPAKAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 307
M +AV VLRG+ V+GT++ Q+ E V+ GE++GLT G HGFHVH++GD+TNGC SA
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82
Query: 308 GAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 487
G HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ ++L+GPN+++GR++VV
Sbjct: 83 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 141
Query: 488 HADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 586
HA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 142 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 177
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 175 bits (425), Expect = 4e-44
Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 4/153 (2%)
Frame = +2
Query: 140 KAVCVLRGD-VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 316
+AV VLRG V GTV+ Q+ E GE++GL+ G HGFH+H++GD+T+GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 317 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 496
FNP K +HGG S VRHVGDLGN+EA D GV K+ D +SL G N++IGR++VVH D
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142
Query: 497 PDDLGLG---GHELSKTTGNAGGRIACGVIGLA 586
DDLG G E S TGNAG R ACGVI LA
Sbjct: 143 RDDLGQGIDDKAEESLKTGNAGARAACGVIALA 175
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 162 bits (394), Expect = 2e-40
Identities = 77/142 (54%), Positives = 97/142 (68%)
Frame = +2
Query: 164 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 343
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 344 GPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGH 523
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 524 ELSKTTGNAGGRIACGVIGLAK 589
+ SKTTGNAG R+ACG IG+ +
Sbjct: 156 DQSKTTGNAGSRLACGTIGIVE 177
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 161 bits (391), Expect = 5e-40
Identities = 77/139 (55%), Positives = 95/139 (68%)
Frame = +2
Query: 164 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 343
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 344 GPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGH 523
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 524 ELSKTTGNAGGRIACGVIG 580
+ SKTTGNAG R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 161 bits (391), Expect = 5e-40
Identities = 77/139 (55%), Positives = 95/139 (68%)
Frame = +2
Query: 164 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 343
++ GT+ FDQ S + ++G V GL GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQSG--SFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 344 GPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGH 523
P + RH+GDLGNIE+ SG T +S+ DS SL G SIIGR++V+H DDLG G
Sbjct: 97 APDDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 524 ELSKTTGNAGGRIACGVIG 580
+ SKTTGNAG R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 137 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 316
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 884 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 943
Query: 317 FN 322
F+
Sbjct: 944 FS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 137 AKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAH 316
A A+ + R F Q + + + GEV L G+H +H+FGD++ GC+ GA
Sbjct: 675 AVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 734
Query: 317 FN 322
F+
Sbjct: 735 FS 736
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.1 bits (67), Expect = 0.91
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 569 HKQYGHQHYQWSYLAHGHPVPSHQGQHGQ 483
H +G H HGH P+H G HG+
Sbjct: 580 HGSHGVHHGHHESHGHGHHAPAHHGHHGE 608
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 569 HKQYGHQHYQWSYLAHGHPVPSHQGQHGQ 483
H H H++ S+ HGH P+H G HG+
Sbjct: 434 HAPAHHGHHE-SH-GHGHHSPAHHGHHGE 460
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 168 LAELFSSISRMKSHLLLFLERSRA*LRANTVSMCTNLVTTQTVAHQLELISTLKNKIMV- 344
LA+LF +SR + L + + N VS+ +V Q +++ + N++ +
Sbjct: 206 LAQLFEDVSREEGQLNQLFDNKQQHPVINNVSLSEGIVYNQANLTEMQEMRDSCNQVSIS 265
Query: 345 -VPVLLYAMSATSVTLRQLKTLESLKYQSKIPRSLF 449
+P A T + +T+E +P +F
Sbjct: 266 TIPTTSTAQPETLFNVTDSQTVEQWLPTEVVPNDVF 301
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 168 LAELFSSISRMKSHLLLFLERSRA*LRANTVSMCTNLVTTQTVAHQLELISTLKNKIMV- 344
LA+LF +SR + L + + N VS+ +V Q +++ + N++ +
Sbjct: 296 LAQLFEDVSREEGQLNQLFDNKQQHPVINNVSLSEGIVYNQANLTEMQEMRDSCNQVSIS 355
Query: 345 -VPVLLYAMSATSVTLRQLKTLESLKYQSKIPRSLF 449
+P A T + +T+E +P +F
Sbjct: 356 TIPTTSTAQPETLFNVTDSQTVEQWLPTEVVPNDVF 391
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 668 FCLNFTYINKK-PSVFDGNISPSD 736
F NFT I K PS+FD N+SP D
Sbjct: 1713 FNQNFTTIQPKFPSLFDCNLSPDD 1736
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 668 FCLNFTYINKK-PSVFDGNISPSD 736
F NFT I K PS+FD N+SP D
Sbjct: 1713 FNQNFTTIQPKFPSLFDCNLSPDD 1736
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 479 LVVHADPDDLGLGGHELSKTTGNAGGR 559
L+ H P+DL + ELSK G+ GR
Sbjct: 484 LITHVKPEDLDVLASELSKMGGHHNGR 510
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 479 LVVHADPDDLGLGGHELSKTTGNAGGR 559
L+ H P+DL + ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 479 LVVHADPDDLGLGGHELSKTTGNAGGR 559
L+ H P+DL + ELSK G+ GR
Sbjct: 494 LITHVKPEDLDVLASELSKMGGHHNGR 520
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 479 LVVHADPDDLGLGGHELSKTTGNAGGR 559
L+ H P+DL + ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
>U41556-7|AAP68954.1| 145|Caenorhabditis elegans Hypothetical
protein C25B8.4c protein.
Length = 145
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 522 MS*VRPLVMLVAVLLVESLAWPRFKYIHFSYVGLGTTIFSD 644
MS + LV+LVA + S + + K ++SY GT F+D
Sbjct: 1 MSRIFKLVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 41
>U41556-5|AAK39193.1| 212|Caenorhabditis elegans Hypothetical
protein C25B8.4a protein.
Length = 212
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 522 MS*VRPLVMLVAVLLVESLAWPRFKYIHFSYVGLGTTIFSD 644
MS + LV+LVA + S + + K ++SY GT F+D
Sbjct: 1 MSRIFKLVLLVAAVGFVSTRFAQVKLFNWSYKDFGTNAFTD 41
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 668 FCLNFTYINKK-PSVFDGNISPSD 736
F NFT I K PS+FD N+SP D
Sbjct: 1713 FNQNFTTIQPKFPSLFDCNLSPDD 1736
>AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 728
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 479 LVVHADPDDLGLGGHELSKTTGNAGGR 559
L+ H P+DL + ELSK G+ GR
Sbjct: 131 LITHVKPEDLDVLASELSKMGGHHNGR 157
>AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 479 LVVHADPDDLGLGGHELSKTTGNAGGR 559
L+ H P+DL + ELSK G+ GR
Sbjct: 204 LITHVKPEDLDVLASELSKMGGHHNGR 230
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 479 LVVHADPDDLGLGGHELSKTTGNAGGR 559
L+ H P+DL + ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,351,954
Number of Sequences: 27780
Number of extensions: 372642
Number of successful extensions: 1085
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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