Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_G02
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    31   0.25 
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    29   1.0  
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    28   1.3  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    28   1.8  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   7.2  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   7.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.5  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   9.5  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   9.5  

>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 259 INSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKI 429
           +N ++  +D W  ++AG+    +  P  +VY  +     SSS   GQK  KS G+ I
Sbjct: 201 VNLQIGGSDQWGNITAGTDLVRRTHPNANVYALTTPLLTSSS---GQKLGKSAGNAI 254


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +1

Query: 205 DELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSS 384
           DEL+  +S     ++  +IN  L + +  + +SA S+   +       YG    T+H   
Sbjct: 356 DELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKSQA-----AYGHGSVTYHEVP 410

Query: 385 DINGQKTDKSGGHKIINDDGKV 450
             N   T  S G+ I +  G++
Sbjct: 411 RYN--LTSASVGYSISSQRGRI 430


>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 319 SLKPIPGGHVYGESEYTFHS 378
           SL P+P GHV+ E +  FHS
Sbjct: 111 SLVPVPEGHVWVEGDEQFHS 130


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 199 IGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLK 327
           IGD  F      + +  H +IN+KL++++  K V   SVKS+K
Sbjct: 281 IGDVCFSMPRKLNKDGAHRIINAKLSKDEDAKLVE--SVKSIK 321


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 571 EIV*RKSHVNKSKRGLLVLDIAHITCNEINDKLQIKS 681
           +++  KSH++KSKR    L ++    +E   +LQ KS
Sbjct: 346 QVIQEKSHLSKSKRVDSFLSVSPPAFSEYTSELQKKS 382


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 238 WEKVHELINSKLNENDSWKP 297
           W +V EL+NS+L   + W P
Sbjct: 288 WGRVQELLNSQLQPAEIWLP 307


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 335  PEAMCTVNPSTHSIHRQTSTDRRPTKAEV 421
            P    TVN +   IH  TS+D + ++ EV
Sbjct: 1175 PSQQVTVNNTLQQIHVHTSSDGKSSETEV 1203


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 88  LENADIVMTRYQRRWLDAF 32
           LEN D+    Y+R+W+ AF
Sbjct: 329 LENDDVEDAYYERQWMQAF 347


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +1

Query: 277 ENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKIINDDG 444
           END  KP+++   K+        ++G  +    + +D++G   ++   ++ IN DG
Sbjct: 309 ENDPTKPLTSSKSKNRTSKELDDLFGSDDEQSQNVNDLDGNSANEE--NEFINHDG 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,039
Number of Sequences: 5004
Number of extensions: 58979
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)