Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_G02
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 31 0.72
U41109-10|AAB37042.2| 169|Caenorhabditis elegans Hypothetical p... 31 1.3
AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical ... 30 2.2
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 29 5.1
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 29 5.1
Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical pr... 28 6.7
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL132902-14|CAE18021.2| 758|Caenorhabditis elegans Hypothetical... 28 6.7
Z99171-5|CAB16311.1| 280|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 28 8.9
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 241 EKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDIN 393
++V+ INS L N S+ S G + KPIP H E+ H+ + ++
Sbjct: 55 QRVYRSINSTLYNNQSFASSSRGFYRKQKPIPKSHP-KHQEHHHHAKASVS 104
>U41109-10|AAB37042.2| 169|Caenorhabditis elegans Hypothetical
protein F52E1.9 protein.
Length = 169
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 226 SSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGG 342
SSG+ +HE + K N SW P A + L P P G
Sbjct: 9 SSGNSTIIHEEFDEKPTSNFSWPPGQAFPFEPLPPYPAG 47
>AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical
protein Y116F11B.11 protein.
Length = 511
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 213 QLITDWKTWDRLNGNHDEHCYKNQLHNAN-ANELKQSNK 100
+LI WKT+ N H+ YKN N A L++SNK
Sbjct: 104 KLINFWKTFSEANKEHEALFYKNLKQVMNIAKGLEESNK 142
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 208 ELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSL 324
++ A +G +E E I K +E D W PV+ V L
Sbjct: 255 QMAQAGKTGTFENEKEAIAQKSSEKDGWHPVNVQYVADL 293
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 208 ELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSL 324
++ A +G +E E I K +E D W PV+ V L
Sbjct: 255 QMAQAGKTGTFENEKEAIAQKSSEKDGWHPVNVQYVADL 293
>Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical
protein F08G5.7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 167 WFPFKRSQVFQSVMSCLMLPLPEIGKKFTN*LTVNSTRTIVGNQCQRAVSKA*SQYPEAM 346
WFP + + SC+ + +G F L T ++ + + K + +
Sbjct: 149 WFPALAAAPSDADSSCVEMMDGLLGLIFALSLQKGQTNAYSCDESIQIICKYCPRETTST 208
Query: 347 CTVNPST--HSIHRQTSTDRRPTKAEVTKLSTMTEKSTSS 460
TV P+T + + ++T PT TK T T+ STS+
Sbjct: 209 TTVTPTTTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTST 248
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 359 PSTHSIHRQTSTDRRPTKAEVTKLSTMTEKSTSS 460
PST I +TST +RPT +T +T T ST S
Sbjct: 939 PSTSKIP-ETSTTQRPTSPILTSGATSTSSSTES 971
>AL132902-14|CAE18021.2| 758|Caenorhabditis elegans Hypothetical
protein Y71A12B.15 protein.
Length = 758
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 268 KLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTF 372
K E D WKP + VK L + H+ E+E F
Sbjct: 658 KPEECDFWKPANEAIVKKLPDLLAAHITEETEVYF 692
>Z99171-5|CAB16311.1| 280|Caenorhabditis elegans Hypothetical
protein F47G4.5 protein.
Length = 280
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 11 MTCVRALERVEPPTLVTCHNYIRVFQDFCYLFDCFNSFALA 133
+T RAL + TL TCH+Y+ V D D N A
Sbjct: 163 LTASRALSKCHGWTLDTCHDYLPVIIDNIISMDTSNRIIAA 203
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 260 LTVNSTRTIVGNQCQRAVSKA*SQYPEAMCTVNPSTHSIHRQTS-TDRRPTKAEVTKLST 436
+ + T G + RA S CT++ S S+HR+TS D A++T
Sbjct: 493 ILIQEATTPKGIKSHRAQSNLTHHLRHGRCTMDASAVSLHRRTSPPDFEKIHAKITDNFR 552
Query: 437 MTEKSTSSISI 469
T S++ I
Sbjct: 553 NTNSKPSTVPI 563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,360
Number of Sequences: 27780
Number of extensions: 327998
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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