Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F24
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.69 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   8.5  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    22   8.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   8.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 377 RQDT*GPRSFKKSLDPS*ILREFRVSSSFNVLPLASSLRA*RSGYRDFFTLCWIF 213
           RQ+T    S+  +  PS +LR    S+    L  ASSL+  R G   F    ++F
Sbjct: 4   RQETSNEDSYLSAGRPSNLLRTSFSSAKLEKLYRASSLQQRRGGLEYFLLSAFLF 58


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 173 ILPSGFALDTLRISISILC 117
           I P+G  L ++RIS+++ C
Sbjct: 142 IFPNGSVLYSIRISLTLSC 160


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 173 ILPSGFALDTLRISISILC 117
           I P+G  L ++RIS+++ C
Sbjct: 142 IFPNGSVLYSIRISLTLSC 160


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 754 RPPGTXIRRIPKPDGNP 804
           RPP   +RR  KP+  P
Sbjct: 249 RPPHPRLRREAKPEAKP 265


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 754 RPPGTXIRRIPKPDGNP 804
           RPP   +RR  KP+  P
Sbjct: 137 RPPHPRLRREAKPEAEP 153


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 810 RKGVSVRFRNAAY 772
           +KGVS+RF N  Y
Sbjct: 551 KKGVSLRFYNVVY 563


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 457 YHIKSTVFDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKAWI 332
           Y   S  +DT T + + + +  L  + +K +   + LK  WI
Sbjct: 129 YDYPSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWI 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,930
Number of Sequences: 438
Number of extensions: 5683
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)