Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F23
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    28   0.091
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 676 LCLQFFCNFFIIIRPHWVIFIGHIPIKIT 590
           LC+ +FC  FII   H+       P+K T
Sbjct: 296 LCIYYFCRAFIIFPTHFYCAFSLYPLKST 324



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -1

Query: 196 LCWLKVMICFLHNIIFTSFLYFYLKPQLVSSVAHDFGFFKILNYLIIFMYYLFHL 32
           L +L  +  F  +++F   +Y++    ++ ++   F    I+   I + YY F L
Sbjct: 193 LLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFIL 247


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 542  SSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDY 646
            +S KI+ +    SL +RD   N A EY     NDY
Sbjct: 1349 TSDKIRQQP-DGSLFIRDVSRNNAGEYSCHVENDY 1382


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 485 LTPVIDLKSKSKDEDESNPSSPKIQPKTITAS 580
           L  +  + + + D    +PSSP+I   + T S
Sbjct: 49  LNAISQITNSTLDPGRKSPSSPRISSPSSTKS 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,880
Number of Sequences: 336
Number of extensions: 3494
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)