Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_F23
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 30 0.40
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.93
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 29 0.93
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 29 0.93
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 27 2.8
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.0
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 5.0
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 26 5.0
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 6.6
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 6.6
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 26 6.6
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 8.7
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 500 DLKSKSKDEDESNPSSPKIQPKTITASL--NVRDFDWN---VANEYDPMWPNDY 646
D+K +E + PS+P +QP A + N ++WN A P+ PN Y
Sbjct: 70 DVKDLRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQAQTAQPPQPVQPNPY 123
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.93
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 446 QPKR-EALRRST--QVLTPVIDLKSKSKDEDESNPSSPKIQP 562
QP E+L ++T Q+ TP+ ++K+ KD++E S + P
Sbjct: 435 QPNNPESLAQTTLLQISTPISNIKANGKDDEEKKEESDLVTP 476
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 28.7 bits (61), Expect = 0.93
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = +1
Query: 169 NKSLLLTSKVVS*FSTFMWLLGFGACMEHIIDFNSLMLMITHFVKRSNPVIKN 327
N+SLLL + + S FM L CMEH L L+IT K NP+I+N
Sbjct: 936 NQSLLLAASLT--LSKFMCLSN-NFCMEH------LPLLITILEKCDNPIIRN 979
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 28.7 bits (61), Expect = 0.93
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 278 INELKSIMCSIQAPKPSNHINVENYETTLLVKSND 174
+ LK++ AP+P+ H V+ YE +++ ND
Sbjct: 612 VQNLKNMELDDPAPQPAKHSRVDRYEHPKVLEDND 646
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +2
Query: 446 QPKREALRRSTQVLTPVIDLKSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYD 625
+PK+ + + +D + ++ PS+P + + D N NE
Sbjct: 85 KPKKAHGKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHGSNAGNESL 144
Query: 626 PMWPNDY--EKVAKELQAKRLQ 685
P+ D+ E ++KE + +RL+
Sbjct: 145 PLLEEDHKPESLSKEQEVERLR 166
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +2
Query: 500 DLKSKSKDEDESNPSSPKIQPKTITASLNVRDFDWN---VANEYDP 628
DL + + + S PSSPK + + DFD N + YDP
Sbjct: 141 DLDADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENGNFIRKNYDP 186
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 121 PQLVSSVAHDFGFFKILNYLIIFMYYLFHLHKN 23
P+ V D G F +L L F +F LHKN
Sbjct: 110 PKAVDDATADVGIFLMLGALRGFNQGIFELHKN 142
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 208 IMRLLCWLKVMICFLHNIIFTSFLYFYLKPQLVSSVAHDFGFFKILNYL 62
I+++L W L + FT + Y +P L SVA +F L+ L
Sbjct: 28 ILKVLLWTAPWYYCLTTLFFTWLIILYPRPTLACSVAAWLFWFTSLDTL 76
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 449 PKREALRRSTQVLTPVIDLKSKSKDEDESNPSSP 550
PKR A RS ++ + KSKD S S+P
Sbjct: 211 PKRPAFTRSATSPDKILPTRIKSKDTVSSGDSTP 244
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 195 SSLIILDIYVVTWLWCLYGT 254
++LII +++ W W +YGT
Sbjct: 556 AALIITAAFIILWPWPMYGT 575
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -1
Query: 208 IMRLLCWLKVMICFLHNIIFTSFLYF---YLKPQLVSSVAHDF 89
I + L + LHNI SFLY Y +++SV DF
Sbjct: 49 IFKCLSSCNYALSILHNICLASFLYLSKCYYHTHILTSVRLDF 91
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -3
Query: 290 VIININELKSIMCSIQAPKPSNHINVENYETTLLVKSNDLFPSQY 156
V+ +NELK ++ I A + + + +E T K + +QY
Sbjct: 72 VLTTLNELKELLSQIDATRIRDEKHKRQFEATENAKRKEEIEAQY 116
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 461 ALRRSTQVLTPVIDLKSKSKDEDESNPSSPKIQPKT 568
+L +T + TP+ D+ S SN SSP I+ K+
Sbjct: 380 SLSDTTNLNTPISDIPSPGSSTTCSNLSSPHIKRKS 415
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 91 FGFFKILNYLIIFMYYLFHLHKNP 20
FG Y+++ +YYL H+ K P
Sbjct: 206 FGTLSSYGYVLMVLYYLIHVIKPP 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,919
Number of Sequences: 5004
Number of extensions: 54748
Number of successful extensions: 182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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