Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_F23
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 32 0.42
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 30 2.2
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 2.2
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 29 3.0
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 29 3.9
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 29 3.9
03_05_0258 - 22442527-22443927 29 5.2
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 28 6.9
01_05_0166 + 18844468-18845184,18847394-18847690 28 9.1
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 506 KSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAK 661
+ + K+ +E+ K + KTIT +DW +ANE P+W + ++V K
Sbjct: 315 EEEPKEGEEATEGEKKKKKKTITEKY----WDWELANETKPIWMRNPKEVEK 362
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 497 IDLKSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 664
+D ++K+ D+ + K + KT+ +DW + NE P+W + +V+ E
Sbjct: 575 VDEPVEAKEGDDETKTEVKKKTKTVVEKY----WDWELTNETQPIWLRNPREVSTE 626
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 115 LVSSVAHDFGFFKILNYLIIFMYYLFHLHKNPQSH 11
L+S V HD G L+YLI ++ LF H P H
Sbjct: 301 LLSKVQHDIGDSCSLDYLIDSIFPLFRKHIEPDLH 335
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 488 TPVIDLKSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAK 661
T ++ ++K+ +E+ K + KTIT +DW +ANE P+W +++ K
Sbjct: 560 TVEVEEDEEAKEGEEAKEGEQK-KKKTITEKY----WDWELANETKPIWMRSPKEIEK 612
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 506 KSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 664
+ K +D DE K + K S +WNV N+ P+W E++ KE
Sbjct: 233 EGKVEDVDEEKEEKEKKKKKIKEVS-----HEWNVMNKQKPIWLRKPEEITKE 280
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 506 KSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 664
+ K +D DE K + K S +WNV N+ P+W E++ KE
Sbjct: 233 EGKVEDVDEEKEEKEKKKKKIKEVS-----HEWNVMNKQKPIWLRKPEEITKE 280
>03_05_0258 - 22442527-22443927
Length = 466
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 488 TPVIDL-KSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVA 658
TP ID+ K D+ + P++ + + L + FDW+ PM P+ + VA
Sbjct: 330 TPAIDVCKGLVGDKAVVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVA 387
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 473 STQVLTPVIDLKSKSKDEDESNPSSPKIQPKTITASLNVRDFDWNVANEYD 625
++ +L I L + + S PS PKIQ + + VR F + +EYD
Sbjct: 236 NSTLLVCTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYD 286
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 608 VANEYDPMWPNDYEKVAKE 664
V EYDP PNDYE K+
Sbjct: 61 VMEEYDPARPNDYEDYRKD 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,850
Number of Sequences: 37544
Number of extensions: 299371
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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