Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F22
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.74 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   5.2  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   6.9  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 116 VTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTA 295
           +T  +TLT +    FKV S P +T     L+  ++EF    A S  +   GI +  +Q  
Sbjct: 636 LTVYVTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQPT 695

Query: 296 GNVFLK 313
            N  L+
Sbjct: 696 LNQILE 701


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 201 TAVNGVASGTLSTLNGSFGSDVSVILKVTFDILNYT 94
           + + G  S T++T  G +G  +    ++  D+L+YT
Sbjct: 241 STILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYT 276


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 234 STLNSSAANFNTAVNGVASGTLSTLNGS-FGS 142
           +TL S A     A+  +ASGT +  NG  FGS
Sbjct: 348 ATLGSKARAGKLAIEDMASGTFTISNGGIFGS 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,375
Number of Sequences: 5004
Number of extensions: 37793
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)