Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_F19
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 1.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 2.1
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 27 2.8
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 2.8
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 3.7
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 4.9
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 4.9
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 4.9
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.5
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 6.5
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 8.6
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 25 8.6
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 8.6
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 25 8.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 106 NVTIVDLEPEILNKAQKSIQANLGRVAK-KLYKDDPGKIEGFVKESLDRIKISTKVEDSV 282
NV I +L+P I NKA + G++ K+ D+ G +G+ D ++ + + V
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 283 NADLI 297
N L+
Sbjct: 229 NGMLL 233
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 458 WRPPNLSFLLMPEPIAFTDI 399
W+ P +S L+PEPIA+ DI
Sbjct: 914 WKHPIVSEELLPEPIAYGDI 933
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 540 HGLVSVLGNVIAFYNLQESHHWYWI 466
H L + N+I FYN E+ W W+
Sbjct: 65 HKLCNGHKNIIHFYNTAENPQWRWV 89
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 217 IEGFVKESLDRIKISTKVEDSV 282
IEGF+K+S D I +ST V S+
Sbjct: 457 IEGFLKKSNDEIYMSTSVSPSI 478
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 249 DQNIHES*RQCECGFDYRSHC*KAG 323
D+N+H C GF Y+S+C G
Sbjct: 271 DRNLHGDVVLCSLGFRYKSYCSNVG 295
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 QAMMEWGKSVGKTCITCKDTPGFVVNRILXPYSAEAL 642
+ ++ GKS K I C P F++N I Y AL
Sbjct: 87 ECLLSGGKSFAKV-INCLRFPSFLINFIFSVYQTSAL 122
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 328 KQDLFNKL-DKLAPEHTILATNTSSISVNAIGSGIKRKDKFGGL 456
K D F+KL D+L P+ TSS+ V + + +R + GGL
Sbjct: 44 KHDPFHKLWDRLQPKAQSTIQRTSSLPVPSSSNFKERLNNIGGL 87
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 448 GGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWG 552
G LH F+PV LL VI ++ E YQ +++ G
Sbjct: 123 GKLHLFDPVKTSELLHVI---NLHEILYQKLVKQG 154
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -2
Query: 296 IKSAFTLSSTFVDILILSRDSLTKPSILPGSSLYSFLATLPKLAWI-LFWALLSISGSKS 120
IK A +TF++ + ++ KPSI ++L+S + L + W+ + ++ G K
Sbjct: 342 IKKATDFITTFINKMSDVKEF--KPSISTANTLFSIASRLKDVKWLSAGFDMIDKYGLKP 399
Query: 119 TMVTF 105
T VT+
Sbjct: 400 THVTY 404
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 559 VGKTCITCKDTPGFVVNRILXPYSAEALRMYERGDATKEDIDIGLK 696
+G+T IT + +L Y AE +Y GD TK LK
Sbjct: 29 IGRTDITVNPIDSNLQKIVLDCYQAEIHSVYVNGDLTKFSYSDALK 74
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 253 KISTKVEDSVNADLIIEAIVEKLDIKQDLFNKL 351
KIS ++ + DL+I+A ++ L+ K FN L
Sbjct: 391 KISELRKEVFDTDLLIQASIDSLEKKVQKFNSL 423
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 205 DPGKIEGFVKESLDRI-KISTKVEDSVNADLIIEAIVEKLDIKQDLFNKLDKLAPEHTIL 381
DPG G V+ S DRI S+ D + D + + K ++ + +L++ P +
Sbjct: 69 DPGNDSGHVRSSNDRIPSTSSNHADGHHVDSVFSNLSAKPTVESNT-EELEEEPPSYEQA 127
Query: 382 ATNTS 396
A +T+
Sbjct: 128 AADTA 132
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 8.6
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -2
Query: 404 DIDEVLVARIV-CSGANLSSLLNRSCFMSSFSTMASIIKSAFTLSSTFVDILILSRDSLT 228
DI ++L ++ C L ++ + +S+ S + + FTL T +I+ D+L
Sbjct: 536 DIKKLLNEELLNCQKQELPDVMENTYQISTVSGIKN--DPLFTLDQT-CNIIAKLADNLI 592
Query: 227 KPSILPGSSLYSFLATLPKLAWIL 156
PS+ GSS Y L L +++
Sbjct: 593 HPSVPIGSSAYRCRRNLADLLFLI 616
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 609 VNNESWSVLTSDASLAHRLAPL 544
VNN+ S +T+D LA R+A L
Sbjct: 54 VNNKDQSAMTNDTDLAKRIARL 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,159
Number of Sequences: 5004
Number of extensions: 67168
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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