Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F19
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    27   0.14 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.3  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 583 KDTPGFVVNRILXPYSAEALRMYERGDATKEDIDIGLKLGAG 708
           ++  GFV+NRI      EA R+   G    +D+D  +  G G
Sbjct: 3   REIDGFVLNRIQYAILNEAWRLVADGILNAKDVDAVMSEGLG 44


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 154 KSIQANLGRVAKKLYKDDPGKIEGFVKESLDRIK 255
           +SI  N   + KKL +D+P +  G+ K  +  I+
Sbjct: 588 RSITRNATALIKKLCRDNPAERLGYQKGGISEIQ 621


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 482 ITGTGLKKWRPPNLSFL-LMPEPIAFTD 402
           IT TGL+ WR  N ++  L+P  + F +
Sbjct: 8   ITTTGLENWRVNNSNYTELLPIDMRFNE 35


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 265 KVEDSVNADLIIEAIVEKLDIKQDLFNKLDKLAPEHT 375
           K+E  +  DL  ++ +  +++K+D+ N  D +    T
Sbjct: 130 KIELEIRRDLPGKSTITTVEVKRDIINPEDVILIRRT 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,536
Number of Sequences: 438
Number of extensions: 4771
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)