Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F16
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    27   0.26 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.8  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   1.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   3.1  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   3.1  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   9.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   9.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 380 IHPDLYDNILVSISAAARSNQIY---VVVNGRELMDCTKNDTGEPCPELKEYIFNTNVVF 550
           + P L +N+  S      + Q Y   V+++GR+LM C +  +G+    +   I   N++ 
Sbjct: 165 LRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH--NLLS 222

Query: 551 DRN 559
           D+N
Sbjct: 223 DKN 225


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 269 QPPQCNECSYEC 234
           +P QCN+C Y C
Sbjct: 257 KPFQCNKCDYTC 268


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 269 QPPQCNECSYEC 234
           +P QCN+C Y C
Sbjct: 15  KPFQCNKCDYTC 26


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 585 LRYRSITAPFLSNTTFVLKI 526
           L + S+  P LSN TFV+ +
Sbjct: 554 LYFMSLLNPILSNVTFVIDV 573


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 585 LRYRSITAPFLSNTTFVLKI 526
           L + S+  P LSN TFV+ +
Sbjct: 279 LYFMSLLNPILSNVTFVIDV 298


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 335 VVPVYGSLKRYPIPAIHPDLYDNILVSISAAARSNQIYV 451
           +VP Y   K     ++   +   +LVSI AA  +  IYV
Sbjct: 26  IVPPYSFEKPDSQKSLWKKIQGVVLVSIIAAGTAYSIYV 64


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 335 VVPVYGSLKRYPIPAIHPDLYDNILVSISAAARSNQIYV 451
           +VP Y   K     ++   +   +LVSI AA  +  IYV
Sbjct: 26  IVPPYSFEKPDSQKSLWKKIQGVVLVSIIAAGTAYSIYV 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,760
Number of Sequences: 336
Number of extensions: 4229
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)