Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_F16
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 42 2e-04
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 41 2e-04
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 2.7
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 6.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 8.1
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 8.1
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 41.5 bits (93), Expect = 2e-04
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Frame = +2
Query: 527 IFNTNVVFDRNGAVIDRYRKINLF-REYSHTPALSPDLGYFDTDFGVKFSHFICFDIMFQ 703
I+N+ + NG + YRK++LF E H S D F+T FG K IC+D F
Sbjct: 99 IYNSCIYITENGNLGGVYRKVHLFDTERKHFKKGS-DFPIFETSFG-KLGVMICWDTAF- 155
Query: 704 VPAVQSVQKLNVTD-VIFSTLWFSELPYLTAVQ-IQQAYAYEMNVNFIGA 847
P V + LN D ++ +T W E PY + +A A+E + + A
Sbjct: 156 -PEVARIHALNGADLLVVATNW--ENPYSDDWDLVTKARAFENCIPLVAA 202
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Frame = +2
Query: 497 GEPCPELKE-YIFNTNVVFDRNGAVIDRYRKINLFR-------EYSHTPALSPD--LGYF 646
G PE K+ ++NT +VFD +G +I +RKI+LF + + +LSP +
Sbjct: 124 GGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMV 183
Query: 647 DTDFGVKFSHFICFDIMF 700
DT++G KF IC+DI F
Sbjct: 184 DTEYG-KFGLGICYDIRF 200
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -3
Query: 669 NLTPKSVSK*PKSGLKAGV*EYSRKRLILRYRSITAPFLSNTTFVLKIYSFSSGQGSP 496
N +PKS + P K+G+ E R I Y S ++P++ + F+ ++ + S GSP
Sbjct: 689 NKSPKSSTMVPLMKYKSGLNEGMRTSSI--YSSTSSPYIRDQYFLNRMLTNGSHNGSP 744
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 356 LKRYPIPAIHPDLYDNILVS---ISAAARSNQIYVVVNGRELMDCTKNDTGEPCPELKEY 526
+ + P ++ L NI +S + N I +V +GR+LM C + +G+ L
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 527 IFNTNVVFDRNGAVI 571
+ ++ FD+ A +
Sbjct: 228 L---SLAFDKGPAAV 239
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 338 VPVYGSLKRYPIPAIHPDLYDN-ILVSISAAARSNQIYVVVNGREL 472
VP +GS K PA+ LYD +LVSIS + ++Y+ ++ E+
Sbjct: 1388 VPRFGSFK---YPALK--LYDRGVLVSISHMPQKEKLYITISADEV 1428
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 109 LHCFDXAFVNLQLNQQMLRGNSVRR 35
+HC + F LQ+NQ ++ NS R
Sbjct: 269 VHCLNTLFSKLQINQSIIFCNSTNR 293
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 449 VVVNGRELMDCTKNDTG 499
V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 449 VVVNGRELMDCTKNDTG 499
V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 762 NVLKITSVTFSFCTDCTAGT*NMMSKQIK*LNLTPKSVSK*PK 634
N+LK+ V T T N SK +K LTP++V P+
Sbjct: 291 NLLKVFHVPVESSTTNAVSTGNTSSKILKPRTLTPRTVDPIPE 333
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 335 VVPVYGSLKRYPIPAIHPDLYDNILVSI 418
++P++ S KR+ +P L+DN V I
Sbjct: 139 IIPIFKSKKRFMTSHNNPSLHDNFSVRI 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,195
Number of Sequences: 5004
Number of extensions: 68859
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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