Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_F16
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 34 0.17
08_01_1048 + 10624027-10624575,10625332-10625522,10626044-106265... 33 0.30
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 31 1.6
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 29 3.7
04_04_0502 - 25686982-25688361 29 3.7
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 29 6.5
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 28 8.5
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Frame = +2
Query: 527 IFNTNVVFDRNGAVIDRYRKINLFR---------EYSHTPALSPDLGYFDTDFGVKFSHF 679
++NT VF +G + ++RKI+LF + S T DL DTD G +
Sbjct: 140 LYNTCCVFGSDGELKGKHRKIHLFDIDIPGKITFKESKTLTAGQDLTVVDTDVG-RIGIG 198
Query: 680 ICFDIMFQ 703
IC+DI FQ
Sbjct: 199 ICYDIRFQ 206
>08_01_1048 +
10624027-10624575,10625332-10625522,10626044-10626539,
10626664-10626749,10626853-10627033
Length = 500
Score = 33.1 bits (72), Expect = 0.30
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 344 VYGSLKRYPIPAIHPDLYDNILVSISAAARSNQIYVVVNGRELMDCTKNDTGEPCPELKE 523
VY ++ +P+ + D Y ++V + A+AR Q+Y + D D + PE E
Sbjct: 117 VYENVLFFPVVQLLRDRYPGVVVDVVASARGKQVYEMCKNVRYADV--YDPDDDWPEPAE 174
Query: 524 YIFNTNVVFDR 556
Y V+ +R
Sbjct: 175 YTHQLGVLKNR 185
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 337 CTSLWLTETIS----HTGDTPRFV**YFSVNIGGCKK*SNLRCGQWPR 468
C+ W +T+S +T P V YF +++GG + S+ RCG R
Sbjct: 480 CSDDWTAKTVSVMTFYTNPIPSVVQSYFILSLGGVTRTSHKRCGNQSR 527
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 464 RELMDCTKNDTGEPCPELKEYIFNTNVVFDRNG 562
R+LMD + + T E CP ++ I ++ V D NG
Sbjct: 596 RKLMDDSLSQTAEACPLIENLILSSCVSIDLNG 628
>04_04_0502 - 25686982-25688361
Length = 459
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 453 WSMAESSWTVLRMTPANLVRS*RSISLTQTWCLIGTGR 566
WS S +R+ P N++ S I Q+WC +GR
Sbjct: 368 WSRMPSHVPNIRVIPGNVIMSVTVIVYDQSWCFTQSGR 405
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 530 FNTNVVFDRNGAVIDRYRKINLF 598
+NT+V+ D +G + YRKI+LF
Sbjct: 176 YNTHVLIDDSGEIRSSYRKIHLF 198
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 314 TNKTTAFVVPVYGSLKRYPIPAIHPDLYDNILVSISAAAR-SNQIYVV 454
+ KT AFVVPV L+R P P P ++ + + IS S+QIY V
Sbjct: 71 SGKTLAFVVPVVEILRRRPSP---PKPHEVLGIIISPTRELSSQIYNV 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,552,307
Number of Sequences: 37544
Number of extensions: 436768
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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