Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F16
         (875 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.99 
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    25   4.0  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   7.0  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +2

Query: 176  DSQYVAAVVEFIMSDDVEDNIRNYIHYIEEAAKQHADIIV----FPELCLTNKTTAFVVP 343
            D+  +  V  +I       N++  +  ++E    HAD+++    +P  CL ++T  F + 
Sbjct: 1163 DNTNIGKVASYIREKTT--NLQTIVISLKEEFYCHADVLIGICPYPAECLVSQTLIFDLE 1220

Query: 344  VYGSLKR 364
             YG  ++
Sbjct: 1221 KYGDYRQ 1227


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 443 IYVVVNGRELMDCTKNDTGE 502
           I +++NGR+LM C +  +G+
Sbjct: 205 IPIILNGRDLMACAQTGSGK 224



 Score = 23.8 bits (49), Expect = 7.0
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 559 VPIKHHVCVKDILLQLRTRFAG-VILSTVHELSAIDHN 449
           +P+ HH+  K+  L+LRTR    VI++   EL+   H+
Sbjct: 230 LPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHD 267


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 392  LYDNILVSISAAARSNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTNVVFDRNGAVI 571
            L D+  VS SA+  +++  +V +  E  D  K+D  EP       I N N   + NG + 
Sbjct: 1061 LSDSRPVSRSASDEASKDGMVASKEERTDVVKDDGKEPA----SVISNDNGPSENNGTLD 1116

Query: 572  DRYRK 586
              + K
Sbjct: 1117 KHHEK 1121


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,998
Number of Sequences: 2352
Number of extensions: 17350
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93853377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)