Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F16
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.        30   1.9  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    29   3.3  
AF100307-12|AAC68928.1|  338|Caenorhabditis elegans Hypothetical...    29   3.3  
AC026301-3|AAK68898.2|  332|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical ...    28   7.6  

>X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +2

Query: 137 SLAXATSQQSTPE--DSQYVAAVVEFIMSDDVEDNI---RNYIHYIEEAAKQHADIIVFP 301
           +L   T  QS P+  + +   A  E I+ D ++  I   RN +H  E  + Q AD+++  
Sbjct: 307 NLPYITMDQSGPKHLNLKLTRAKFEQIVGDLIKRTIEPCRNVLHDAEVKSSQIADVLLVG 366

Query: 302 ELCLTNKTTAFVVPVYGSLKRYPIPAIHPD 391
            +    K  A V  ++G   + P  A++PD
Sbjct: 367 GMSRMPKVQATVQEIFG---KVPSKAVNPD 393


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 356  LKRYPIPAIHPDLYDNILVSISAAARSNQIYVVVNGRELMDCTKN 490
            +++Y   ++H D+    ++ + A A+++ +YVV    E+  C  N
Sbjct: 2008 IQKYRAHSLHSDIGKKRILKLVADAKNDLVYVVTRQNEVWKCATN 2052


>AF100307-12|AAC68928.1|  338|Caenorhabditis elegans Hypothetical
           protein T12B5.2 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 569 IDRYRKINLFREYSHTPALSPDLGYFDTDFGVKFSHFICFDI--MFQVPAVQSVQ 727
           +D++++I     + +T  L   +  FD+   V   HF CFDI  + + PA  ++Q
Sbjct: 212 VDQFKRITRLEHWENTEELKIWVSNFDSAIIVYCFHFKCFDIHKLDEFPAHIAIQ 266


>AC026301-3|AAK68898.2|  332|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.7 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 557 NGAV-IDRYRKINLFREYSHTPALSPDLGYFDTDFGVKFSHFICFDI 694
           NGAV +D++ +I L  ++             D+ F + FSHF CF I
Sbjct: 196 NGAVQLDQFEQITLLYQWKCAKNFEIWYSRLDSKFILHFSHFQCFTI 242


>AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical
           protein C17A2.2 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 414 QYRRLQEVIKSTLWSMAESSWTVLRMTPANLV 509
           ++R + EV+   +WS   S WT+       LV
Sbjct: 234 RHRHINEVVDCNIWSRGHSKWTIFADLDERLV 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,770,389
Number of Sequences: 27780
Number of extensions: 394047
Number of successful extensions: 1092
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)