Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_F15
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 375 e-104
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 374 e-104
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 372 e-103
04_04_0040 + 22322839-22324173 33 0.37
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 2.6
12_02_0735 - 22636835-22639502,22639755-22640734 29 3.5
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 29 4.6
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 4.6
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.6
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 6.1
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 8.0
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 8.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 8.0
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 375 bits (922), Expect = e-104
Identities = 167/255 (65%), Positives = 207/255 (81%)
Frame = +3
Query: 69 MARGPXQHLKRLNAPKAWMLDKLGGVYAPXPSTGPHKLRECLPLVIFLRNRLKYALTGNE 248
MARG +HLKRLNAPK WMLDKLGG +AP PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 249 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 428
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 429 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 608
+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 609 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 788
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPK 240
Query: 789 GKGIRLTIAEERDXR 833
GKGI+L+I EE+ R
Sbjct: 241 GKGIKLSIIEEQRKR 255
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 374 bits (919), Expect = e-104
Identities = 166/255 (65%), Positives = 207/255 (81%)
Frame = +3
Query: 69 MARGPXQHLKRLNAPKAWMLDKLGGVYAPXPSTGPHKLRECLPLVIFLRNRLKYALTGNE 248
MARG +HLKRLNAPK WMLDKLGG +AP PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 249 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 428
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 429 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 608
+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 609 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 788
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPK 240
Query: 789 GKGIRLTIAEERDXR 833
GKGI+L+I EE+ R
Sbjct: 241 GKGIKLSIIEEQRKR 255
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 372 bits (914), Expect = e-103
Identities = 168/254 (66%), Positives = 204/254 (80%)
Frame = +3
Query: 72 ARGPXQHLKRLNAPKAWMLDKLGGVYAPXPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 251
ARG +HLKRLNAP WMLDKLGG +AP PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 252 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 431
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 432 KLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLC 611
KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Query: 612 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 791
M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF IGK K ++SLP+G
Sbjct: 198 MVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKG 257
Query: 792 KGIRLTIAEERDXR 833
KGI+L+I EE R
Sbjct: 258 KGIKLSIIEEARKR 271
>04_04_0040 + 22322839-22324173
Length = 444
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 668 TSRL--LR-HCAHQGLHGTHLRHEVEQRVHNRQGHXGVHLAAARQGHPPHHRRGAG 826
TSRL LR H H HG + RH++ +R R H L A G P + AG
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVARATGVPMTSSKAAG 80
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 748 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 626
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 760 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 665
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 213 SGKSPGASTRATCGDRLTXSVHTHRQVCPTSMLW 112
+G+SPG + RA GD L +VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 760 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 665
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 226 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 98
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 646 APSCPARDI--PAPSTLCTSRTPRDTPSP 726
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 727 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 596
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 782 AARQGHPPHHRRGAG 826
AAR+GHPP H G G
Sbjct: 4 AARRGHPPPHENGVG 18
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 363 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 467
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,668,600
Number of Sequences: 37544
Number of extensions: 609707
Number of successful extensions: 1888
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -