Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F12
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   155   3e-38
07_03_0361 + 17215312-17216217                                         29   1.6  
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731...    27   6.6  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    27   8.8  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    27   8.8  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  155 bits (375), Expect = 3e-38
 Identities = 69/110 (62%), Positives = 89/110 (80%)
 Frame = +3

Query: 48  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 227
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 228 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 377
            + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>07_03_0361 + 17215312-17216217
          Length = 301

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +3

Query: 15  RSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAA 194
           R+  +G+E    T K++ GG    G G  + V+  +        +A K+ ++  +VE AA
Sbjct: 47  RAAVSGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VVEFAA 101

Query: 195 VRDINDASVYP-MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKD 320
              +N + +YP M +L +    + + +     S   R   +++
Sbjct: 102 SHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRRE 144


>07_03_0011 +
           12370624-12370684,12372573-12372718,12372793-12373129,
           12374323-12374452,12375346-12375406,12375572-12375618,
           12376873-12376950,12377195-12377345,12377495-12377558,
           12377735-12377893,12378007-12378128,12378952-12378981,
           12379050-12379124,12379563-12379644,12379809-12379938,
           12381417-12382164,12382833-12383054,12383127-12383276,
           12384851-12384904,12384985-12385058,12386130-12386204,
           12386365-12386584
          Length = 1071

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 107 REMHKLRAVRAKGQGHQKVRD*EHRRSGGGQR 202
           R+  K ++ R K +G +K R  EH R  GG+R
Sbjct: 101 RKREKTQSDRDKDKGKEKERMEEHERRPGGER 132


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 281 HPQQSCQEQIEERQKNPYSSQE 346
           +PQQS Q+Q EE+Q  P SS +
Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 268 ACHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVHRQC 384
           ACH     ++ G+D +K   +  +P    + +C  H  C
Sbjct: 705 ACHVDYNEEIRGSDEKKPAANKFIPSSQRVVSCAAHPFC 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,651
Number of Sequences: 37544
Number of extensions: 224953
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)