Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F06
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    28   1.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   5.4  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   5.4  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 154 IISINQFHTTSPKINLHVFTISDKQVLVLAKNIMSAC 44
           I +I Q HTT P  ++ VF     ++ ++++N+   C
Sbjct: 615 ITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELC 651


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 305 GTLYPFPVVFTYYVMVIITHVLFNS 231
           G LY + V+FTY++ + + +VLF+S
Sbjct: 195 GFLYLY-VLFTYFISIFLLYVLFSS 218


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 771 FQFDHSILLIRLVSIDDVPRWIRLLERRGDTWRRWTHNGFH 649
           F FD SI  +  +SI DVP        R + W +  HN  H
Sbjct: 40  FSFDDSISRLNSLSISDVPS----AHSRVEQWNQQVHNLNH 76


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 678 MCRRDVRA-VGSTSGHHRCSQ 737
           +C++D R+ + +T GHH C Q
Sbjct: 256 ICKKDYRSPIATTCGHHFCEQ 276


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 283  LYSHIMLWLSSHMFCLTQFMFFKQNYLCVTC 191
            LY HI+L   SH  C+      KQ ++  TC
Sbjct: 1078 LYEHIVLKAESHQICIICRDIIKQGFI-TTC 1107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,067
Number of Sequences: 5004
Number of extensions: 69186
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)