Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_F02
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   101   5e-23
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.56 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   1.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.2  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   6.9  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    24   9.1  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    24   9.1  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   9.1  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  101 bits (242), Expect = 5e-23
 Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
 Frame = +1

Query: 103 NATKYTRYHST--KSPRKGTLPRARRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECA 276
           N  K+T +  T  K      L + +RRYDRKQ G+GGQ+KP+F         +VLRLEC 
Sbjct: 16  NCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECV 75

Query: 277 DCKVRSQVALKRCKHFELGGDKKRKGQMIQF 369
            CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 76  SCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106



 Score = 27.9 bits (59), Expect = 0.74
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 57  MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQG 167
           MVN+PK R+TY              +QYKK  +   AQG
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQG 39


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 166 PWAACLSLDFLYCDTLCTLWHL 101
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 64  TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRARRR--YDRKQQGYGGQSKPIF 225
           TY+N +   A    +  Y   H      K   P+A  R  +DR Q GY G + P +
Sbjct: 294 TYENESAVEA--TMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYY 347


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 112 KYTRYHSTKSPRKGTLPRARRRYDRKQQGYGGQSK 216
           KY  YH  K+P KGT   +R     K   Y   SK
Sbjct: 565 KYPYYH-VKTPEKGTTVVSRTVTSPKSGAYASPSK 598


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 148 SLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 50
           S+ F +   L TL+H   + + + C G F +F+
Sbjct: 67  SISF-FSGLLLTLFHFPIIGFFVECLGFFNLFK 98


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 132 TVIPCVLCGIYIFCSTSCAVLVRSPFLSSFGTISTNVKKS 13
           +V+ CV  G+  +    C VL+      SF  I   + KS
Sbjct: 141 SVLACVWYGVQAWIGGECVVLMIRSIWPSFSHIPNTMAKS 180


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +2

Query: 14  LFLTFVDIVPNELKNGERTKTAQDVLQKM*MPQSTQGITVQKVQGKARCPGLEDVMIVNS 193
           LFL F  +  N +   E    A D L  +   + T  +     +GKA    + ++    S
Sbjct: 593 LFLLFPLLPGNAIDVNESLARAFDQLVGIVPSEPTIQVPNLIEKGKAPLLSMFEIPRSPS 652

Query: 194 RVTVVSPNPSSKRRQKPLRK 253
           R    SP+ +++  +KPL+K
Sbjct: 653 RFKARSPSKAARVLKKPLKK 672


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 203 VVSPNPSSKRRQKPLRKLCSVLS 271
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,487
Number of Sequences: 5004
Number of extensions: 28273
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)