Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_F02
(444 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 111 2e-25
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 2e-10
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 4.2
SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 7.0
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 27 9.2
SB_55624| Best HMM Match : PHD (HMM E-Value=3.8) 27 9.2
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 111 bits (267), Expect = 2e-25
Identities = 51/96 (53%), Positives = 63/96 (65%)
Frame = +1
Query: 82 GRTAKNVNATKYTRYHSTKSPRKGTLPRARRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 261
G+ + K T+Y K+ + + +RRYDRKQ G+GGQ+KP+F IVL
Sbjct: 21 GKKCRRHTLHKVTQY---KTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVL 77
Query: 262 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 369
R+EC CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 78 RMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 253 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 351
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 265 LECADCKVRSQVALKRCKHFELG 333
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 25.4 bits (53), Expect(2) = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 79 AGRTAKNVNATKYTRYHSTKSPRKG-----TLPRARRRYDRKQQ 195
AG T+KN ++++ R H + P T R+R D K++
Sbjct: 29 AGMTSKNTSSSRKARMHQVEGPGNSRCCPETAETRRKRVDNKRR 72
Score = 21.0 bits (42), Expect(2) = 4.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 262 RLECADCKVRSQVALKRCKHFELGGDKKRKGQM 360
R C C++ ++ L++ GD KG+M
Sbjct: 71 RRVCRLCRLSHRLVLRKKTLARTSGDSAGKGEM 103
>SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 91 AKNVNATKYTRYHSTKSPRKGTLPRARRRYDRKQQGYGGQSKP 219
A V+ +Y STK RK + +R+ D+K+Q G P
Sbjct: 59 AARVSLAQYKTKQSTKKQRKVLRGQKKRKDDQKKQAEGANYAP 101
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 382 LEAFKIGSSVPFSSCHHQAQSACI 311
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -3
Query: 163 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 68
W L F+ C TLC W + Y R G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 289 RSQVALKRCKHFELGGDKKR 348
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 362 IICPFLFLSPPSSKCLHLFNATCDLTLQSAHSR 264
I+C F +P +KCLH F C L +S+
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKKNSK 278
>SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)
Length = 349
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 110 QSTQGITVQ-KVQGKARCPGLEDVMIVNSRV 199
Q+TQG Q + +GKA C G+ D +V S V
Sbjct: 71 QTTQGGATQGEKEGKASCNGIADGEVVKSTV 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,315
Number of Sequences: 59808
Number of extensions: 240920
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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