Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_E21
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autopha...    89   3e-18
AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autopha...    89   3e-18
U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormon...    29   4.8  
Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine rece...    28   8.4  

>AC025726-16|ABA00157.1|  163|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform b protein.
          Length = 163

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
 Frame = +2

Query: 140 DREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQ 319
           D EV R++W+  +P  F L Q       +P PFY M+PR SY  L I K+   F R    
Sbjct: 2   DYEVCRKVWESHVPCQFTL-QSSGGTHGEPLPFYTMLPRFSYLALAIQKVLSSFNRRDDG 60

Query: 320 ENSDSE-MWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKD 496
           E   S+ MWL+ NG PLK + PIG +YD    ++      + V  ++ P    +   ++D
Sbjct: 61  EKVHSDKMWLEHNGIPLKMYIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQM--VDRD 118

Query: 497 VVEAHYMSTVKEADVLKHRGQVMSTMQKKGSQSVMAW 607
           ++EA +M  +KEAD LK + ++   M K   +S   W
Sbjct: 119 MMEAMFMQNIKEADYLKTKAEITKNMMK--DESAQLW 153


>AC025726-15|ABA00156.1|  273|Caenorhabditis elegans Atg (autophagy)
           related protein5, isoform a protein.
          Length = 273

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
 Frame = +2

Query: 140 DREVLREIWDGKLPICFHLAQEEIMEIQQPDPFYVMVPRLSYFPLVIDKMKRHFLRFISQ 319
           D EV R++W+  +P  F L Q       +P PFY M+PR SY  L I K+   F R    
Sbjct: 2   DYEVCRKVWESHVPCQFTL-QSSGGTHGEPLPFYTMLPRFSYLALAIQKVLSSFNRRDDG 60

Query: 320 ENSDSE-MWLDFNGQPLKWHYPIGFLYDLYCGNDPQLPWTLTVHFTKFPEDILLHCPNKD 496
           E   S+ MWL+ NG PLK + PIG +YD    ++      + V  ++ P    +   ++D
Sbjct: 61  EKVHSDKMWLEHNGIPLKMYIPIGVIYDQANLSENDSILEIIVRTSQPPPQFQM--VDRD 118

Query: 497 VVEAHYMSTVKEADVLKHRGQVMSTMQKKGSQSVMAW 607
           ++EA +M  +KEAD LK + ++   M K   +S   W
Sbjct: 119 MMEAMFMQNIKEADYLKTKAEITKNMMK--DESAQLW 153



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/63 (39%), Positives = 38/63 (60%)
 Frame = +3

Query: 579 KKDHNQLWLGLQNDKFDQFWAINRRLMESHGDNDGFKHIPLRIYTDDGVYNQRLVCPXNT 758
           K +  QLW  + N+ FD+FW I ++LME+   N+ F HIPLR+Y  +  + Q L+   + 
Sbjct: 146 KDESAQLWRSVCNNNFDEFWTIVQKLMETSEGNE-FAHIPLRVYVKNQAFKQALITAKHP 204

Query: 759 DNS 767
           D S
Sbjct: 205 DGS 207


>U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 9 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 515 YNVLLLHLCLGNEEECLQGTL*SVLSKSRVVEDH 414
           YN  LL LCL NE  C       +LS   VV  H
Sbjct: 269 YNDALLQLCLRNEGSCGPARFNDLLSVCHVVNKH 302


>Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical
           protein F01D5.7b protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 573 CKKKDHNQLWLGLQNDKFDQFWAINRRLMESHGDNDGFKHIPL 701
           C   D    W G      D+   IN R++  HGD+D  + IP+
Sbjct: 235 CNNPDKETTWWGDSFLSIDKICHINTRVLICHGDHD--QRIPM 275


>U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 8 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 569 LTSLVLCVSV--HQPLSL*TYNVLLLHLCLGNEEECLQGTL 453
           L +L LC     H P  + TY+V+L+++ L N   C+ G L
Sbjct: 21  LVNLFLCYVALFHSPPIIRTYSVILINITLTNIGVCITGFL 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,048,124
Number of Sequences: 27780
Number of extensions: 400676
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)