Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_E20
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL109917-9|CAI95657.1|  124|Homo sapiens transmembrane protein 5...    29   5.5  
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein...    29   9.6  

>AL109917-9|CAI95657.1|  124|Homo sapiens transmembrane protein 52
           protein.
          Length = 124

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 93  GVCVPSCLHRPSCRCIYFT*LRTLHIPPTHLLAIL-PTPTRPH 218
           G C  SC    SCRC  +   R+L + P    ++L P P+R H
Sbjct: 10  GCCCRSCRSCRSCRCRRWVGRRSLSVRPPRGGSLLGPRPSRAH 52


>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
            receptor related protein-deleted in tumor protein.
          Length = 4599

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 93   GVCVPSCLHRPSCRC 137
            G CVPS L RP+C C
Sbjct: 4261 GTCVPSVLGRPTCSC 4275


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,096,237
Number of Sequences: 237096
Number of extensions: 649627
Number of successful extensions: 1543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)