Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_E18
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028    124   1e-28
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192     56   2e-08
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511     56   2e-08
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296...    56   2e-08
09_03_0089 + 12265916-12267232                                         29   2.9  
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115...    29   5.1  
09_04_0233 - 15890085-15890234,15890345-15890551,15891112-158913...    28   9.0  
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327...    28   9.0  

>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
          Length = 157

 Score =  124 bits (298), Expect = 1e-28
 Identities = 66/165 (40%), Positives = 97/165 (58%)
 Frame = +3

Query: 150 FISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQ 329
           F+ +K +    +  V +++ + +R+DY KYN +   +++L N IK +DP + +R E +  
Sbjct: 17  FLDFKREKGHRDAIVTQRYLLVERDDYKKYNGICLMVQKLVNIIKQMDPRDPYRAEMTDM 76

Query: 330 LLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRV 509
           LL+KL                         RRL  +MV+ K +E +KEA  +I+QGHVRV
Sbjct: 77  LLDKL-------------------------RRLATVMVKLKFAEHLKEAVTYIQQGHVRV 111

Query: 510 GPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFDML 644
           GPE V DPAFLV R++EDF+TWVD S I++ V EYN   DDFD +
Sbjct: 112 GPETVTDPAFLVTRNMEDFITWVDSSKIKRKVQEYNGELDDFDAM 156


>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
          Length = 195

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
 Frame = +3

Query: 180 SEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIG 356
           +E+K++ ++ ++ KRE +     LSR IR  A  +  LD  N  R      LL ++ + G
Sbjct: 28  AELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYG 86

Query: 357 LIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVK 527
           L+     + D  LA  V   +F  RRL  L+ +  M+++I  A   I Q H+RVG ++V 
Sbjct: 87  LLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 144

Query: 528 DPAFLVNRSLEDFV 569
            P+F+V    E  +
Sbjct: 145 IPSFMVRVESEKHI 158


>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
          Length = 218

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
 Frame = +3

Query: 180 SEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIG 356
           +E+K++ ++ ++ KRE +     LSR IR  A  +  LD  N  R      LL ++ + G
Sbjct: 51  AELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYG 109

Query: 357 LIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVK 527
           L+     + D  LA  V   +F  RRL  L+ +  M+++I  A   I Q H+RVG ++V 
Sbjct: 110 LLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 167

Query: 528 DPAFLVNRSLEDFV 569
            P+F+V    E  +
Sbjct: 168 IPSFMVRVESEKHI 181


>03_01_0382 +
           2961665-2961672,2962504-2962557,2962935-2963004,
           2963141-2963386,2967246-2967491,2968837-2968888,
           2969270-2969651,2970527-2970681,2971389-2971713,
           2975803-2975871,2976189-2976346,2976444-2976551,
           2976659-2977131
          Length = 781

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
 Frame = +3

Query: 180 SEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIG 356
           +E+K++ ++ ++ KRE +     LSR IR  A  +  LD  N  R      LL ++ + G
Sbjct: 244 AELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYG 302

Query: 357 LIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVK 527
           L+     + D  LA  V   +F  RRL  L+ +  M+++I  A   I Q H+RVG ++V 
Sbjct: 303 LLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 360

Query: 528 DPAFLVNRSLEDFV 569
            P+F+V    E  +
Sbjct: 361 IPSFMVRVESEKHI 374


>09_03_0089 + 12265916-12267232
          Length = 438

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -3

Query: 583 PSTHVTKSSSDLLTRNAGSFTTSGPTLTCPCSINFVASLIVSDILFRTINTGSLRLQKE 407
           P +  T SSS+L   NA + TTS    T   S+N  A+    D  F+      LR+Q +
Sbjct: 241 PLSTSTPSSSNLAAANANATTTSTAAATTATSVNPTAAAGAGD-TFQLTPAALLRMQHD 298


>05_01_0167 -
           1153778-1153927,1154006-1154797,1155602-1156408,
           1156514-1156618,1156985-1157059,1157160-1157233,
           1157388-1157450,1157549-1157647,1157704-1157811,
           1157908-1157973,1158073-1158150,1158257-1158304,
           1158381-1158440,1158527-1158610,1158902-1158949,
           1159049-1159096,1161462-1161579
          Length = 940

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 159 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 338
           W+ ++  +E+ + K+          ++N LSR   E+A+K        +F  E S ++ E
Sbjct: 714 WRKNHKSTEIIIGKEIIPVSESSVLRFNILSRKFAEIASKGAKTVEAYKFLMEESEKIDE 773

Query: 339 KL 344
           KL
Sbjct: 774 KL 775


>09_04_0233 -
           15890085-15890234,15890345-15890551,15891112-15891356,
           15891618-15891831,15892890-15893036
          Length = 320

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 477 TKFIEQGHVRVGPEVVKDPAFLVNRSL 557
           T+F+ +GH+ VGPE    PA+LV ++L
Sbjct: 122 TRFLFEGHLTVGPE-PPPPAWLVAQNL 147


>01_05_0712 -
           24531654-24531874,24532438-24532538,24532621-24532716,
           24532951-24533048,24533827-24533883,24534764-24534895,
           24535042-24535155,24535227-24535359,24535448-24535678,
           24535761-24535843,24536009-24536137,24536504-24536599,
           24536719-24536773,24537316-24537386,24537472-24537525,
           24537691-24537768,24537985-24538117,24539381-24539496,
           24539580-24539651,24540113-24540218,24540657-24540772,
           24541170-24541319,24541410-24541492,24541591-24541669,
           24542645-24542695
          Length = 884

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/91 (21%), Positives = 40/91 (43%)
 Frame = +3

Query: 198 KKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWD 377
           K+   +K+ED T  +  S+  ++   +  DLDP+ E   +    L E    + L+     
Sbjct: 611 KREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEGTKYLKLLQNNSS 670

Query: 378 LALATNVSASSFCRRRLPVLMVRNKMSETIK 470
            +L T+  +     R+  +L+    + + IK
Sbjct: 671 DSLETHTLSFELNMRKQKILLAFQAVKQLIK 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,376,236
Number of Sequences: 37544
Number of extensions: 328700
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)