Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_E18
(741 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 24 1.7
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 3.0
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 3.0
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 3.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 4.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 4.0
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 7.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 7.0
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 7.0
AF393497-1|AAL60422.1| 143|Apis mellifera odorant binding prote... 22 7.0
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 7.0
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 294 PNNEFRTESSAQLLEKLYQIGLIPTR 371
P+N RT S+ LEKLY+ + R
Sbjct: 19 PSNLLRTSFSSAKLEKLYRASSLQQR 44
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 669 YNNTYFKILYCYHNNK*KYQYTF 737
YNN +K LYC + K Y +
Sbjct: 91 YNNNNYKKLYCNNYKKLYYNINY 113
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 669 YNNTYFKILYCYHNNK*KYQYTF 737
YNN +K LYC + K Y +
Sbjct: 91 YNNNNYKKLYCNNYKKLYYNINY 113
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 669 YNNTYFKILYCYHNNK*KYQYTF 737
YNN +K LYC + K Y +
Sbjct: 91 YNNNNYKKLYCNNYRKLYYNINY 113
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 153 ISWKLDNNISEVKVMKKFCIQKREDYT 233
I W+L ++ V +M FCI K +T
Sbjct: 205 IRWELAGTLAVVWIMCYFCIWKGVKWT 231
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 153 ISWKLDNNISEVKVMKKFCIQKREDYT 233
I W+L ++ V +M FCI K +T
Sbjct: 258 IRWELAGTLAVVWIMCYFCIWKGVKWT 284
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 7.0
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +3
Query: 210 IQKREDYTKYNKLSRDIRE 266
+++ E+Y Y KL R++R+
Sbjct: 392 VKQVEEYMAYRKLPREMRQ 410
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 7.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -3
Query: 100 ILGTPSTRREVMXCCC 53
+LG P R E+ CC
Sbjct: 199 LLGVPGKRNEIYYNCC 214
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 7.0
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +3
Query: 210 IQKREDYTKYNKLSRDIRE 266
+++ E+Y Y KL R++R+
Sbjct: 360 VKQVEEYMAYRKLPREMRQ 378
>AF393497-1|AAL60422.1| 143|Apis mellifera odorant binding protein
ASP5 protein.
Length = 143
Score = 21.8 bits (44), Expect = 7.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 413 ERTGRDISGQGKIPSCRYQSNLVKFF 336
E TG D + C Y+ N KFF
Sbjct: 116 EYTGDDCQKTYQYVQCHYKQNPEKFF 141
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.8 bits (44), Expect = 7.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 541 RNAGSFTTSGPTLTCPCSIN 482
R ++T PTL CP + N
Sbjct: 205 RETPNYTACPPTLACPLNPN 224
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,810
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -