Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_E17
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0768 - 5935319-5935417,5935536-5935583,5935721-5935780,593... 37 0.021
01_01_0012 + 71903-72935,73468-73981,74619-76008 37 0.021
06_03_0374 + 20026179-20026661,20027170-20027280,20027372-200274... 35 0.064
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 35 0.064
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 31 0.79
05_03_0259 - 11161447-11161706,11161764-11164266 29 3.2
03_06_0418 + 33785482-33785870,33786098-33786173,33786985-337870... 29 3.2
04_04_0807 - 28192320-28192494,28192611-28192759,28192882-281929... 28 9.7
>01_01_0768 -
5935319-5935417,5935536-5935583,5935721-5935780,
5935884-5935996,5936082-5936154,5936895-5936939,
5937020-5937133,5937227-5937253,5937963-5938247
Length = 287
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 633 EEIRRTVLVADTG-SLTSQQLIDHFCQAGEVKYMRFCSXDVDTLKYALIE 779
+ IRRTV V+D ++T ++L D F G+V R C L++A IE
Sbjct: 128 DSIRRTVYVSDIDHTVTEERLADIFANCGQVVDCRICGDPHSVLRFAFIE 177
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 36.7 bits (81), Expect = 0.021
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 171 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 350
+++Q++N++P T D ++ LFGY GK+ D TI D I YV+Y
Sbjct: 358 KMVQISNLSPLLTVDHIKQLFGYCGKVVDC----TITD-----SKHIAYVEYSKQEEATA 408
Query: 351 AQHMTN 368
A + N
Sbjct: 409 ALALNN 414
>06_03_0374 +
20026179-20026661,20027170-20027280,20027372-20027416,
20029610-20029682,20029762-20029874,20030009-20030068,
20031518-20031565,20031658-20031726,20032928-20033092,
20033630-20033680,20034774-20034803
Length = 415
Score = 35.1 bits (77), Expect = 0.064
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 633 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSXDVDTLKYALIE 779
+ +RRTV V+D +T Q+L + F G+V R C L++A IE
Sbjct: 184 DSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIE 233
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 35.1 bits (77), Expect = 0.064
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 633 EEIRRTVLVADTGS-LTSQQLIDHFCQAGEVKYMRFCSXDVDTLKYALIE 779
+ +RRTV V+D +T Q+L + F G+V R C L++A IE
Sbjct: 170 DSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIE 219
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +3
Query: 417 EIPDEHKALEMSSNGTLVPGLSSVEPRLPMHVINTLDGIPPNQV 548
E P++ +A E S GTLV G VE ++ I TL +PPNQV
Sbjct: 394 EYPEKGQAREFGSTGTLVSG---VEAKIVD--IKTLKHLPPNQV 432
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 360 MTNTVFIDRALIVIPVQSGEIPDEHKALEMSSNGTLVPG--LSSVEPRLPMHVINTL-DG 530
M VFI AL+ + G++ + + L+ N ++PG +S++E HV++T+ DG
Sbjct: 635 MNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADG 694
Query: 531 IP 536
P
Sbjct: 695 NP 696
>03_06_0418 +
33785482-33785870,33786098-33786173,33786985-33787071,
33788096-33788143
Length = 199
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +3
Query: 171 RVIQVTNIAPQATKDQMQTLFGYLGKIDDIRLYPTIRDVSCPVQSRICYVKYYDSANVNV 350
RV+ V N+ + ++M +FG G I IRL +D + + Y YD+ N
Sbjct: 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRL-GNAKDTR--GTAFVVYEDIYDAK--NA 73
Query: 351 AQHMTNTVFIDRALIVIPVQSGEI 422
H++ +R LIV+ Q ++
Sbjct: 74 VDHLSGFNVANRYLIVLYYQPAKM 97
>04_04_0807 -
28192320-28192494,28192611-28192759,28192882-28192980,
28193212-28193433,28193522-28193611,28193837-28193959,
28194040-28194199,28194288-28194347,28194484-28194574,
28194667-28194730
Length = 410
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 447 MSSNGTLVPGLSSVEPRLPMHVINTLDGIPPN 542
+++ G VPG+ + R P+ IN L G PP+
Sbjct: 10 LAAVGKPVPGIGEMGNRRPLRDINNLVGAPPH 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,336,680
Number of Sequences: 37544
Number of extensions: 409980
Number of successful extensions: 1063
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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