Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_E16
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 70 3e-13
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 68 1e-12
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 62 4e-11
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 31 0.16
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 2.0
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 2.0
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 2.0
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 2.0
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 6.1
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 69.7 bits (163), Expect = 3e-13
Identities = 41/111 (36%), Positives = 55/111 (49%)
Frame = +1
Query: 100 VSKAXXACVXSALILVDXXVAVTGXXISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 279
+S + A SALIL D + +T + ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 280 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 432
NIGSG SD+DMGFGLFD
Sbjct: 61 NIGSGA--GAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 67.7 bits (158), Expect = 1e-12
Identities = 40/111 (36%), Positives = 54/111 (48%)
Frame = +1
Query: 100 VSKAXXACVXSALILVDXXVAVTGXXISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 279
+S + A SALIL D + +T + ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 280 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 432
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 62.5 bits (145), Expect = 4e-11
Identities = 37/111 (33%), Positives = 53/111 (47%)
Frame = +1
Query: 100 VSKAXXACVXSALILVDXXVAVTGXXISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 279
+S + A +ALIL D + +T + ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 280 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 432
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 57 SLRPPATCTFKTQNGVKSXIXMCXLCSHPGGXXCCRNWXXNFHHLE---SGGCRCR 215
SL P +CTF + + +C LC H C + W N + S GC C+
Sbjct: 1258 SLVPRMSCTFCCLS-IHGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSCSSGCGCK 1312
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 400 SDDDMGFGLFD 432
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 400 SDDDMGFGLFD 432
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 400 SDDDMGFGLFD 432
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 400 SDDDMGFGLFD 432
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 6.1
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = +3
Query: 123 CXLCSHPGGXXCCRNWXXNFH 185
C C PG CC +FH
Sbjct: 266 CSACHGPGNFLCCETCPNSFH 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,808
Number of Sequences: 5004
Number of extensions: 22459
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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