Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_E16
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 96 1e-20
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 93 2e-19
U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein ... 31 0.60
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.2
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 3.2
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 5.6
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage ... 27 9.7
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 96.3 bits (229), Expect = 1e-20
Identities = 52/112 (46%), Positives = 63/112 (56%)
Frame = +1
Query: 97 MVSKAXXACVXSALILVDXXVAVTGXXISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 276
M S ACV +ALIL D VA+TG I+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 277 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 432
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 92.7 bits (220), Expect = 2e-19
Identities = 51/112 (45%), Positives = 62/112 (55%)
Frame = +1
Query: 97 MVSKAXXACVXSALILVDXXVAVTGXXISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 276
M S ACV +ALIL D VA+TG I+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 277 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 432
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein 1
protein.
Length = 596
Score = 31.1 bits (67), Expect = 0.60
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = +3
Query: 36 KRACSLLSLRPPATCTFKTQN-GVKSXIXMCXLCSHPGGXXCCRNWXXNFHHLESGGCRC 212
+RA S L+ C F Q G+K CSH C + CRC
Sbjct: 360 RRAASRLTQEMQLFCNFCGQRYGLKDESLQALRCSHIFHEKCLHTYLLQRTDQTCPKCRC 419
Query: 213 RAILAR--SVRQSL 248
RA+L+ S+R S+
Sbjct: 420 RAVLSDNISIRSSI 433
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 400 SDDDMGFGLFD 432
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 400 SDDDMGFGLFD 432
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 400 SDDDMGFGLFD 432
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/56 (23%), Positives = 20/56 (35%)
Frame = +3
Query: 87 KTQNGVKSXIXMCXLCSHPGGXXCCRNWXXNFHHLESGGCRCRAILARSVRQSLGR 254
K N S +C +C+H G W + GC CR ++ + R
Sbjct: 5007 KDYNESFSQFSICNICNHGGHVNHIATWFETEKYCPVAGCDCRCQRSKQTKHLKAR 5062
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 58 RSGLRQLARSKLKMVSKAXXACVXSALILVDXXVAVTGXXISTILKAAAVDVEPY 222
R L + S KM+ K S ++ ++ VA+T + + AAA+D PY
Sbjct: 25 RRALLYVPASNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage a
trois) tfiih subunitprotein 1 protein.
Length = 310
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 105 KSXIXMCXLCSHPGGXXCCRNWXXNFHHLESGGCR-CRAILARS 233
K + M C HP C+N N L SG C C +L ++
Sbjct: 15 KQLVMMINECGHP----LCKNCVDNIFALNSGNCHVCNRVLRKN 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,951,709
Number of Sequences: 27780
Number of extensions: 136586
Number of successful extensions: 253
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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