Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_E14
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    77   1e-15
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.3  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   4.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   7.0  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 76.6 bits (180), Expect = 1e-15
 Identities = 40/86 (46%), Positives = 52/86 (60%)
 Frame = +3

Query: 6   HKRLHGVGFXKRAPSAIKAIRKFAEKQXGTPDIRVXTRLNKFLWSKGVRNVPFXXXXXXX 185
           HKRL+GV F KRAP AIK I  FA+K   T ++RV   LNK +W +G+RNVP        
Sbjct: 22  HKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLS 81

Query: 186 XXXNDDEDSAHKLFTLVTYVPVASIK 263
              +D++D A  L+T V  V VA+ K
Sbjct: 82  RKRSDEDDKA--LYTYVQAVDVANPK 105


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 307 GVYSWLASTFSVCKPLID 254
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 24  VGFXKRAPSAIKAIRKFAEKQXGTPDIRVXTRLNKFLWSKGV 149
           +GF   + S + A+   +E+      IRV  +L  F W +G+
Sbjct: 10  IGFGPASLSFLIALHDHSEEPLKNKKIRVFEKLPTFSWHEGM 51


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 252 QQARKSLV*ITYVRNLHHHYVFVKASH 172
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,890
Number of Sequences: 5004
Number of extensions: 18597
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)