Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_E13
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 244 LSRHHRNGNTDKMPFNHYIIFS*SLKCI 327
           L+ HHRN +T +M     ++F   L CI
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLPCI 343


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 220 KTPAMPEALSRHHRNGNTDKMPF 288
           KT A+P  L+RH+R  +T + P+
Sbjct: 99  KTFAVPARLTRHYRT-HTGEKPY 120


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 249  PTPPKRKHRQN 281
            P PP R H QN
Sbjct: 1860 PPPPPRNHDQN 1870


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 198 NLFRMKLKNSCYARS 242
           N++++ LKN  Y RS
Sbjct: 674 NMYKLDLKNMKYTRS 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,142
Number of Sequences: 438
Number of extensions: 2068
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)