Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_E12
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 30 0.43
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 28 1.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 2.3
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.3
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 27 4.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.0
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 7.0
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 9.3
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 9.3
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 9.3
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +3
Query: 429 LAWHRCNIHYYLREKYYGNVKKISNEALQQNPRNSEFIFYTGIALILEGQVHKGIS 596
++W Y+ + +KI+++ L+ NP+N E + G + G+ K I+
Sbjct: 143 MSWMYLKAQVYIFQNDMDRAQKIAHDVLRLNPKNVEALVLRGKVMYYSGENAKAIT 198
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +2
Query: 188 AVISYEKKGKGITLIHTNVPQAFQGKGV-----GKLLAQYAFDHALEN-RLNVIC 334
A+I +G+ L H +VP + + K +AQ+AFD AL+N R +V C
Sbjct: 134 AIIRENTEGEYSGLEHQSVPGVVESLKIITEYKSKRIAQFAFDFALQNGRKSVTC 188
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 268 SWEIIGTVCL*SCFRKQVECDLQMSLFSQIL 360
SWEI+G CL C K SL S IL
Sbjct: 802 SWEILGDACLSFCQLKNYHNRFPNSLISDIL 832
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 274 PNSFSLKSLRHICMDQGYPLAFLLIADHSIFSF 176
PNS SL S ++I +D+G+P + I S+F +
Sbjct: 279 PNSSSLLSEKYITLDKGFPSKY--IYSRSLFEY 309
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 495 ISNEALQQNPRNSEFIFYTGIALILEGQVHKGISELTPLQ 614
+ +E Q+NP + G A+ ++G V+KG + + P Q
Sbjct: 513 VDDEYFQENPHVRPMV--KGTAVAMQGPVYKGRNTMQPFQ 550
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 444 CNIHYYLREKYYGNVKKISNEALQQ 518
C + YY K YG V + NE + Q
Sbjct: 58 CKVKYYGETKTYGEVFVLENERISQ 82
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 609 LQSDSEIQLAVIIALVYAYKVSNLPEKEVLFNL 707
++ +S + L V IAL V+ LPE+E++ L
Sbjct: 1620 IRDESTVTLRVAIALSIVQLVALLPEEEIVLRL 1652
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 450 IHYYLREKYYGNVKKISNEALQQNPRNSE 536
IHY + K V KI ALQ++P N+E
Sbjct: 114 IHYAQKIKAVNIVGKICVAALQKHPNNAE 142
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 50 FGLCRFENSFSCLGMLTRA 106
F R EN+F+C+ ML RA
Sbjct: 338 FSQTRVENAFNCIDMLPRA 356
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 265 FSLKSLRHICMDQGYPLAFLLIADHSIF 182
FS++SLR++C++ LI HS+F
Sbjct: 388 FSVESLRNLCVELIDAFGGALILKHSVF 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,229
Number of Sequences: 5004
Number of extensions: 61258
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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