Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_E08
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...   297   2e-81
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   4.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.2  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.5  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score =  297 bits (728), Expect = 2e-81
 Identities = 139/219 (63%), Positives = 170/219 (77%)
 Frame = +3

Query: 135 ENVGILAMELYFPSQYVDQTELEKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTALH 314
           +++GI  + LY P+QYV+Q  LE  D VSTGKYTIGLG +KM F  DREDI S  LTAL 
Sbjct: 6   KDIGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGLTALS 65

Query: 315 RLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGTA 494
           +LI + +I++  IGRLEVGTETIIDKSKSVK+ LM LF      ++EGID  NACYGG  
Sbjct: 66  QLIKRYQIDISKIGRLEVGTETIIDKSKSVKSVLMQLFGDNH--NVEGIDCVNACYGGVN 123

Query: 495 ALFNAINWVESSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDAPLVFDCGVR 674
           ALFN I+W+ESS+WDGR  IVVAGDIA+Y KG ARPTGGAG VA+L+GP+AP+VF+ G+R
Sbjct: 124 ALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGGAGCVALLVGPNAPIVFEPGLR 183

Query: 675 ASYMTHAYDFYKPDLSSEFPYVXGKLSIQCYLNALXNCY 791
            +YM HAYDFYKPDL+SE+PYV G  S++CY+ AL   Y
Sbjct: 184 GTYMQHAYDFYKPDLTSEYPYVDGHFSLECYVKALDGAY 222


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 147 ILAMELYFPSQYVDQTELEKFDEVSTGK 230
           I+  +  + S  +DQT L  F E+ TGK
Sbjct: 375 IILFKCRYQSSEIDQTTLRAFGEICTGK 402


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 24/77 (31%), Positives = 30/77 (38%)
 Frame = -3

Query: 667 PQSNTRGASGPINIATAPAPPVGLAGPFP*TAMSPATTMAFLPSQDEDSTQFMALKRAAV 488
           P  N   A  PI IA  PAP      P P  A+    T   L S         A++ A  
Sbjct: 227 PAVNHPMAGQPIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQP 286

Query: 487 PP*QALVVSIPSMSVAP 437
            P    + S P+M+V P
Sbjct: 287 VP----MTSSPAMAVVP 299


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 723 MINLACKSHMHVSCMKPAL 667
           +I L CK + H +C+KP L
Sbjct: 409 VIQLPCKHYFHENCIKPWL 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,777
Number of Sequences: 5004
Number of extensions: 64012
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)