Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_E04
(847 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 25 1.2
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 23 3.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 6.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 6.2
AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 22 8.2
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 606 CPIFAVAWTPEGRRLITGASSGEFTLWNGLT 698
C ++ ++WTP G + GA + L G+T
Sbjct: 280 CFLYVLSWTPYGVMSMIGAFGNKALLTPGVT 310
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 23.0 bits (47), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 481 IDMRFNRTLCTPLTFYLLLHIL 546
IDMRFN + FY +L I+
Sbjct: 29 IDMRFNEGHIVSIVFYSVLMII 50
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 352 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 381
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 352 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 381
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 352 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 381
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 352 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 381
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 352 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 381
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 352 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 381
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.2 bits (45), Expect = 6.2
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Frame = +3
Query: 318 FNYQMRFPPQGPLNMTQDDFDGKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQ 497
FNY P +G + +DD+ G + T+DY I+A + ++ D+ + L
Sbjct: 136 FNYD---PGRGHI---EDDYVGPAMELVYAWSTIDYTYDSIEARDSAIFDGDFITENNLP 189
Query: 498 PDAMYTPD--LLPPPSYPDN-PINAVTT-RFVKTATNKMR 605
D + P + D P+ T + KT + K+R
Sbjct: 190 LGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKTKSPKLR 229
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 420 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 449
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 194 IKHGFRTSSPEHGYAPAGHGYDGSTHGPAT 283
I+H ++P GY + G ST PAT
Sbjct: 420 IRHKNSAANPPSGYIRSAFGTPISTGRPAT 449
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.2 bits (45), Expect = 6.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 544 GYEGGGKRSGVYIASG*SACLS 479
G GG G+ IASG SA LS
Sbjct: 42 GANNGGGGGGLGIASGLSAMLS 63
>AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II
protein.
Length = 190
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1
Query: 187 PSNKTWISDILTRTWVCPRRAWV*WVH 267
PS + S+ L W+C R VH
Sbjct: 155 PSKRITASEALKHPWICQRERVASVVH 181
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,511
Number of Sequences: 438
Number of extensions: 5559
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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