Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_E03
(507 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 24 2.6
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 24 2.6
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 24 3.4
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 24 3.4
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 24 3.4
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 23 4.5
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 23 4.5
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 23 4.5
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi... 23 5.9
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s... 23 5.9
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 24.2 bits (50), Expect = 2.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 212 TFHIREVHSGHSGLRQDL 265
TFH+ +V SGH LR+ L
Sbjct: 928 TFHLSQVLSGHGFLREYL 945
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 24.2 bits (50), Expect = 2.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 116 RWCRRKCDRIPRSPQRRVATQRFATSSWQMAL 21
+WCRR DR+ R + + T F ++S ++A+
Sbjct: 811 QWCRRILDRVQRLLAQGI-TSAFHSTSCEVAV 841
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 23.8 bits (49), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 116 RWCRRKCDRIPRSPQRRVATQRFATSSWQMA 24
R CRR +R+ R RRVA + F T ++ A
Sbjct: 868 RECRRLLERVQRVSARRVA-RTFRTVRYETA 897
Score = 22.6 bits (46), Expect = 7.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 212 TFHIREVHSGHSGLRQDL 265
TFH+ +V SGH R+ L
Sbjct: 980 TFHLAQVLSGHGFFREYL 997
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 23.8 bits (49), Expect = 3.4
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 102 SSAPASIGPCVYHHDVQYSSKMFRKRVENLH-FSLPHVPS-IFGRSIQGILAFDKTYSTA 275
S PAS + HH + + R RVEN+ S H+ S + + Q + YS+
Sbjct: 1955 SDLPASSNFILLHHGENSVAPLHRHRVENIQKISGDHILSDVLLSNHQSQIITSALYSSG 2014
Query: 276 SANITQGGIGYNFVNLRMKSERGSKIHYDVYI 371
+ ++ +N + + +IHY V +
Sbjct: 2015 NESLA--------INYEYQKNQIHEIHYPVSV 2038
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 23.8 bits (49), Expect = 3.4
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 102 SSAPASIGPCVYHHDVQYSSKMFRKRVENLH-FSLPHVPS-IFGRSIQGILAFDKTYSTA 275
S PAS + HH + + R RVEN+ S H+ S + + Q + YS+
Sbjct: 1956 SDLPASSNFILLHHGENSVAPLHRHRVENIQKISGDHILSDVLLSNHQSQIITSALYSSG 2015
Query: 276 SANITQGGIGYNFVNLRMKSERGSKIHYDVYI 371
+ ++ +N + + +IHY V +
Sbjct: 2016 NESLA--------INYEYQKNQIHEIHYPVSV 2039
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 23.4 bits (48), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 212 TFHIREVHSGHSGLRQDL*H 271
TFH+ +V SGH R L H
Sbjct: 976 TFHLAQVLSGHGFFRDYLCH 995
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 23.4 bits (48), Expect = 4.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 215 FHIREVHSGHSGLRQDL 265
FH+ +V SGH R DL
Sbjct: 938 FHLSQVLSGHGFFRDDL 954
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 23.4 bits (48), Expect = 4.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 212 TFHIREVHSGHSGLRQDL 265
TFH+ +V SGH R+ L
Sbjct: 988 TFHLSQVLSGHGFFREHL 1005
>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
channel alpha subunitprotein.
Length = 2139
Score = 23.0 bits (47), Expect = 5.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 338 LALHAEIDEVIADS 297
L +HAE DEVI DS
Sbjct: 1250 LIIHAEEDEVIEDS 1263
>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
symporter protein.
Length = 1127
Score = 23.0 bits (47), Expect = 5.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 368 VYIVMNF*SALALHAEIDEVIADSALGDVRRSGAIGLV 255
+Y+V S + L A I D A+ DVR G I +V
Sbjct: 285 MYVVGFCESMIDLLASFGVAIVDGAVNDVRIIGCITIV 322
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,850
Number of Sequences: 2352
Number of extensions: 9741
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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