Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_E03
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50071-7|CAA90405.3|  356|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   4.5  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    27   7.8  

>Z50071-7|CAA90405.3|  356|Caenorhabditis elegans Hypothetical
           protein T07D4.2a protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 46  ANRCVATRRCGDRGMRSHFRRHQRQ*ALVSTTM--TCSTARKCSVRELKT 189
           +NR   T   GD+ ++  +R  QR+ +L+   +  T    R+  VREL+T
Sbjct: 6   SNRFGTTSIFGDQSIKDEYRNRQRRLSLIGGPISGTSPNRRESLVRELRT 55


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 85  HDHRSGE*QHNDLQLHHGKWH*TTHRPA 2
           H+H +   +H     HHG+ H T H PA
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPA 417


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 129 CVYHHDVQYSSKMFRKRVENLHFSLPHV 212
           C YHH + Y  K     +  +  S PHV
Sbjct: 84  CPYHHILNYDEKRIPAAISEVECSCPHV 111


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 204  PHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVN 320
            P+ PS+  R+++ I    K     SA+     IGY+ VN
Sbjct: 1386 PYEPSVRSRNVKAISGRRKVNRVVSASTINCPIGYDLVN 1424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,059,083
Number of Sequences: 27780
Number of extensions: 205447
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)