Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_D23
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 244 1e-65
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.9
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 1.9
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 2.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 4.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 5.7
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 26 7.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.5
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 26 7.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.9
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.9
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.9
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 244 bits (597), Expect = 1e-65
Identities = 125/213 (58%), Positives = 155/213 (72%), Gaps = 1/213 (0%)
Frame = +1
Query: 97 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLAL 276
LYPIAVLIDELK++++ RLN++++LSTIALALG ERT+ ELIPFL E+I DEDEVL AL
Sbjct: 10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSAL 69
Query: 277 AEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFV 456
A+QLG+F++ VGG E+AH LL PLE LAA EETVVRDKAV SL V S + LE++FV
Sbjct: 70 ADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFV 129
Query: 457 PLVQRLAGGDWFTSRTSACGLFSVCYPRVSAP-VKAELRQHFRSLCQDDTPMVRRAAAYK 633
PLVQRL+ +WFTSR S+ GL+ Y + P VK LRQ F LC D+ PMVRR AA
Sbjct: 130 PLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAPMVRRPAATN 189
Query: 634 LGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVR 732
+F +V + + IP+F L+ DDQDSVR
Sbjct: 190 CAKFVFLVTKQEAIDEFIPLFNSLSNDDQDSVR 222
Score = 46.4 bits (105), Expect = 5e-06
Identities = 54/218 (24%), Positives = 82/218 (37%), Gaps = 4/218 (1%)
Frame = +1
Query: 91 ESLYPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGVE-RTKSELIPFLTETIYDED-E 261
E++ L + L N+D +RL S + ++A L + + L+ L + D
Sbjct: 201 EAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWR 260
Query: 262 VLLALAEQLGSFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 441
+A +VG L+ P L E VR + E + +
Sbjct: 261 TRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIV 320
Query: 442 EEHFVPLVQRLAGGDWFTSRTSACGLFSVCYPRVSAPVKAE-LRQHFRSLCQDDTPMVRR 618
E +P++Q L R + P++ E L F L +D+ P VR
Sbjct: 321 LEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRL 380
Query: 619 AAAYKLGEFAKVVEIEYVKSDLIPIFVILAEDDQDSVR 732
KL KVV IE + L+P V LAED Q VR
Sbjct: 381 NIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVR 418
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.9
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = -2
Query: 683 RSLLTYSISTTFANSPSL*AAARRTIGVSS*QRERKC*RSSAFTGAETRG*HTLNSPQAD 504
R+ +Y+ +T+ A+S SL +++ + ++S SS+ + T T SP +
Sbjct: 58 RATTSYNYNTSSASSSSLTSSSAASSSLTS---------SSSLASSSTNS-TTSASPTSS 107
Query: 503 VLEVNQSPPARRCTSGTKCSS-SACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQC 327
L + + + +S T SS ++ + S+ A S T+ S + S+T+++++
Sbjct: 108 SLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNST 167
Query: 326 ANSPP 312
++ P
Sbjct: 168 TSATP 172
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 58 IKMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVER 207
+ + SD TDES++P+ + +++++D + +S L + A+A G +
Sbjct: 56 VNYSMSDE-TDESMFPLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQ 104
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 160 SIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLV 309
SIKK T + G+E +S ++ F + DE L+ Q+ S +NL+
Sbjct: 138 SIKKEGTQVIVFGIETVRSMVLSFPLIILSTLDENFLSEVAQVFSSLNLL 187
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 124 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS 294
EL+NE +Q LNS K L T L E ++L+ FL T + E + +L QL +
Sbjct: 295 ELENEKIQTELNSWKSLITNELPT-PEAVSNKLV-FLQNTNANLGERVSSLESQLSN 349
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -2
Query: 521 NSPQADVLEVNQSPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRG 342
+SP + SP + +S + SSS+ S+++ S +++ S ++ SS++++ S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSS 199
Query: 341 GRRQCANSPPPT 306
++S P T
Sbjct: 200 SSSSSSSSVPIT 211
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 334 LLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLV 465
LLP + A ++ VRD A+A+ +A+ +P A++ VP V
Sbjct: 96 LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKA-IVPSV 138
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 5.7
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 154 LNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS-FINLVGGGEFAH 330
+NS KK + + V T E IPF + D+ A+ L F NLV GE A+
Sbjct: 595 VNSQKKTAPEVSPISV--TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDAN 652
Query: 331 CLLPPLETL 357
CL LE +
Sbjct: 653 CLFHLLENV 661
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 204 LHAQSQRDRRQLLYR---VQTKLYILILQLIYENGNRIQ*FIRPG 79
LH Q R L Y+ + T+LY +L+ Y +GN I + +PG
Sbjct: 52 LHHQRSRYIYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPG 96
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 181 IALALGVERTKSELIPFLTETIYDEDEVL 267
+ L +E+ K E++PFL Y +EVL
Sbjct: 473 LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 403 LRAVAEHHSPQALEEHFVPLVQRLAGGDWF 492
L AV HH A H+ VQ+L WF
Sbjct: 438 LNAVVYHHGTSASGGHYTVDVQQLDKSGWF 467
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 411 RCRAPQPASTRGTLCATSTAPCWRRLVHFKNIC 509
R A P T T C T T P WRR + +C
Sbjct: 625 RANATNPTPTC-TNCQTRTTPLWRRSPDGQPLC 656
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -2
Query: 485 SPPARRCTSGTKCSSSACGLWCSATARSEATALSRTTVSSTAANVSRGGRRQCANSPPPT 306
S P + S + SS+ L S+T+ S ++ TT+ ST + ++ + +SP T
Sbjct: 262 SVPTQTIDSSSFTSSTPVSLTSSSTS-SSGSSQDSTTIDSTPSTIATSTLQPTTSSPITT 320
Query: 305 KLMKL 291
L
Sbjct: 321 SAPSL 325
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 225 DQLRFSPLHAQSQRDRRQLLYRVQTKLYI 139
D +F+P S R+ LLYR++ KL +
Sbjct: 153 DNEKFNPEVISSLASRQDLLYRIRDKLLV 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,294
Number of Sequences: 5004
Number of extensions: 59380
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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