Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D22
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.78 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   5.5  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   5.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   5.5  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 634 AKKTTDADKPKIDETKKTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPA 789
           AK  +  D         + + +VSSA S L+ SA   SAS   + ++   PA
Sbjct: 245 AKTASTDDSSSASSATSSVSSVVSSASSALSASASSASASVSSSASSDASPA 296


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 267 SIINVAIGKITLTPTLRKNDNEQGQSYTRERDS*LRPEIVHSEIEKKNAQLAVSV 431
           ++IN   G    TP  R+ D +  +S  R++   L+P+  + E   KN +   +V
Sbjct: 471 NVINQT-GPAKKTPVQRRKDGKFAKSTKRKKQKSLKPDTENQESSVKNKKAKSNV 524


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 653 ASVVFLANLPYAHLAIAMIAMDSTIQMNTNMTRLS 549
           A  V LAN+P  ++   M   D+T Q+  N++ LS
Sbjct: 537 AKKVILANMPPVNVGTGMYDPDTTEQLMLNISTLS 571


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 660 FISVRRLFSEPPVRPFGDRDDRYGQHHPNEH 568
           FI  +   S P + P  +RD+    HHP  H
Sbjct: 47  FIREQEESSAPLMNPVPERDEAEAPHHPKGH 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,510
Number of Sequences: 5004
Number of extensions: 51636
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)