Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D22
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    30   0.022
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    30   0.022
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.62 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   4.4  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   5.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   5.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 520 CSFDYMDTAMDNLVML--VFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKK-TT 690
           CSFD++    D  V +  +FIW  + I +I I  + Y R      + +K   ++ KK   
Sbjct: 206 CSFDFLTDDEDTKVFVTCIFIWAYV-IPLIFIILF-YSRLLSSIRNHEKMLREQAKKMNV 263

Query: 691 NEIVSSADSVLATSAKVKSASF 756
             +VS+ D   +   ++   +F
Sbjct: 264 KSLVSNQDKERSAEVRIAKVAF 285


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 520 CSFDYMDTAMDNLVML--VFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKK-TT 690
           CSFD++    D  V +  +FIW  + I +I I  + Y R      + +K   ++ KK   
Sbjct: 206 CSFDFLTDDEDTKVFVTCIFIWAYV-IPLIFIILF-YSRLLSSIRNHEKMLREQAKKMNV 263

Query: 691 NEIVSSADSVLATSAKVKSASF 756
             +VS+ D   +   ++   +F
Sbjct: 264 KSLVSNQDKERSAEVRIAKVAF 285


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 14/77 (18%), Positives = 34/77 (44%)
 Frame = +1

Query: 520 CSFDYMDTAMDNLVMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKKTTNEI 699
           CSFDY+    +  + +  I+       + +  + Y +      + +K   ++ KK   + 
Sbjct: 197 CSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDS 256

Query: 700 VSSADSVLATSAKVKSA 750
           + S  +  + SA+++ A
Sbjct: 257 LRSNANTSSQSAEIRIA 273


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 699 YFVRCFLRLIDFWFI 655
           YFV  FL +  +WFI
Sbjct: 225 YFVPLFLIIYSYWFI 239


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 699 YFVRCFLRLIDFWFI 655
           YFV  FL +  +WFI
Sbjct: 101 YFVPLFLIIYSYWFI 115


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 4  SRCVGREMRTCPQV 45
          SRC GR  R CP V
Sbjct: 44 SRCDGRCQRFCPNV 57


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 4  SRCVGREMRTCPQV 45
          SRC GR  R CP V
Sbjct: 44 SRCDGRCQRFCPNV 57


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 556 LVMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKKT 687
           LVML F W + + A+        G    K++     + DE + T
Sbjct: 261 LVMLFFYWRIYNAAVSTTKAINQGFRTTKSSKMFGSRFDEERLT 304


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 17 GVKCEHAPKCSFI 55
          G+KCE   KC F+
Sbjct: 59 GIKCEIYAKCEFL 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,607
Number of Sequences: 438
Number of extensions: 4055
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)