Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D18
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   150   3e-37
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.25 
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    30   0.44 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.77 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   3.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   4.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   7.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.5  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   9.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.5  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  150 bits (363), Expect = 3e-37
 Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 1/230 (0%)
 Frame = +2

Query: 110 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 289
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 290 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 466
           + A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 467 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQ 646
             L R   +        IG   P+F +A Q+++ IL    ++    ++YNKF S VS+  
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFET 202

Query: 647 SDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACS 796
               LYT K+I  +  L+AY+  D +V Q   EF+ A+ +F A+ E  CS
Sbjct: 203 VMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCS 251


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +2

Query: 308 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 472
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 473 LQRLYGKHIISVA 511
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 75  PKRPNILQILWVFIGKIYQSTIGRP 1
           P+ P  L+I  + + K++ ST+GRP
Sbjct: 112 PETPKTLEIAMITVSKMFSSTVGRP 136


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 551  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 730
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 731  QSY 739
            QS+
Sbjct: 2516 QSF 2518


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 659 GASRTGRTIPQT*TCYK*SFRNQTRILR*EWQW 561
           GAS+T    P + +C    F N+   L+ EW W
Sbjct: 45  GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -3

Query: 559 QLTCVQESRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 386
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F+Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 AMTSDRGLCGAVHTGVSKVIRNRLSE 418
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 546  TQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSP 650
            TQ  +PL FSP+ +S+    S + S    +  P P
Sbjct: 1403 TQTDFPLVFSPERSSIDINASSMRSEKASFEIPFP 1437


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 716 DSDVLQSYTEFSLASLLFYALKEGACS 796
           D D+ Q Y   ++ASLL ++L +  CS
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCS 172


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 164  KSVKNIQKITQSMKMVSAAKYTRAERDLK 250
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,678
Number of Sequences: 5004
Number of extensions: 75417
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)