Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_D18
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 76 3e-14
07_03_0571 - 19602755-19603831 62 4e-10
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 32 0.61
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 30 1.9
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 29 4.3
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 4.3
07_01_0696 - 5261008-5263128 29 5.7
08_02_0730 - 20472851-20473075,20473332-20474285 28 9.9
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 76.2 bits (179), Expect = 3e-14
Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 44/262 (16%)
Frame = +2
Query: 143 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 322
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 323 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 493
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 494 HIISVANEIGRLPPTF-------------LDASQLATAILTS------------------ 580
+I +E+ + P + + ++L +A+L +
Sbjct: 176 NIEMTVSELQKNPINYTQDKEWHWWWRKVVQLAELVSAVLITLQQKFTDVIAVLADDILK 235
Query: 581 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLD----------SDVL 730
E+ + ++++NKF SV+S+ + + + + +E S+ LD S++L
Sbjct: 236 NVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEIL 295
Query: 731 QSYTEFSLASLLFYALKEGACS 796
Q+ TEF + +++ A E ACS
Sbjct: 296 QNLTEFQFSCVMYNAALENACS 317
>07_03_0571 - 19602755-19603831
Length = 358
Score = 62.5 bits (145), Expect = 4e-10
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Frame = +2
Query: 137 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 313
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 314 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 457
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 458 KSRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFK 625
K R + I E+ + PT D+ + + + K+ +Y+KF
Sbjct: 157 KGNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFV 212
Query: 626 SVV---SYAQSDLPLYTKKSI 679
S+V Q+ LP+ K I
Sbjct: 213 SLVRSDPIIQTLLPMSPKGEI 233
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 540 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCP 659
SW++ W +P S Q S+ P+ S I ++ LW R PS P
Sbjct: 306 SWSRAFWAIPASTQSISM-PQESTIPNNLLW-RKPSKDNP 343
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = -3
Query: 529 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVR 350
E + SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 349 GHSNKQLLGVIFGRCNLSP 293
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -3
Query: 445 DHLDVLSTRFAETVADHF---------RYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 305
D+L ++S A V D F ++ SV T++R GH +++L V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428
Query: 304 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 194
+ + +EL C T+S + T++ H L +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 420 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 295
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>07_01_0696 - 5261008-5263128
Length = 706
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 710 SLDSDVLQSYTEFSLASLLFYALKEGAC 793
S+D D LQS+ AS LF +L +G+C
Sbjct: 429 SIDEDELQSFVPEFAASNLFVSLPQGSC 456
>08_02_0730 - 20472851-20473075,20473332-20474285
Length = 392
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 508 NTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYT 383
++ DV+ + SL+D A FI H L + + + + +H +T
Sbjct: 346 DSQDVVPIDSLEDEALFIGHNGTLCLSTKDYPALLPNHVYFT 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,015,935
Number of Sequences: 37544
Number of extensions: 557085
Number of successful extensions: 1504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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