Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D17
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 698 HVDIPYNILXTDKPLFYT 751
           ++DI +NI    K LFYT
Sbjct: 231 YLDITFNITMRRKTLFYT 248


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 698 HVDIPYNILXTDKPLFYT 751
           ++DI +NI    K LFYT
Sbjct: 231 YLDITFNITMRRKTLFYT 248


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 698 HVDIPYNILXTDKPLFYT 751
           ++DI +NI    K LFYT
Sbjct: 227 YLDITFNITMRRKTLFYT 244


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 680 PARAPSHVDIPYNILXTDKPLFYT 751
           P     + DI +NI    K LFYT
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYT 253


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = +3

Query: 489 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 590
           +PY   + KV A     L +   +  +P   ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = +3

Query: 489 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 590
           +PY   + KV A     L +   +  +P   ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 506 PEEGHGVEDITTRHIFSYKILS 571
           P EG  + D   RHI    IL+
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 360 SCHTASDIPGNLHTLPGLCLSLLG 289
           S  T  ++   LHT+  +C+  +G
Sbjct: 15  SAMTLDELKSGLHTVQSVCMKEIG 38


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 235 QRRRARSCSHSKSSFPSTAKQRKTKTRER 321
           +R+R  S   ++S   S A   KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,276
Number of Sequences: 438
Number of extensions: 3222
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)