Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D16
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    25   0.78 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   1.0  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   9.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.6  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 72  VVIXVYITWLHFIKLL*SLVFFRYSIQLSQLHNVSVI*MLNNCFFLVNSANINLC 236
           ++I  Y T LHF+  +  L FFR+     +   +S I  L +  FL N   I +C
Sbjct: 205 LLIISYST-LHFVNYIDDLFFFRFEKSKFEPFLISNI-SLVSLIFLFNCTLIIMC 257


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 299 SNGNVVNSCDVILKYDRSRRQT 234
           SNGN+  S D ILK D  RR T
Sbjct: 124 SNGNLKFSIDNILKADFGRRIT 145


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 397 NAIKWETQNNLPSFYIFNHRGKAL 468
           N++    + +LP F +  HR +A+
Sbjct: 22  NSVGVSNEVSLPQFKVLGHRQRAM 45


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 177  HLRCVAEKAVWNNERKPMITI 115
            H+R VAE  + ++E    +TI
Sbjct: 968  HIRIVAENEIGSSEPSETVTI 988


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 397 NAIKWETQNNLPSFYIFNHRGKAL 468
           N++   ++ +LP F +  HR +A+
Sbjct: 204 NSVGVSSEVSLPQFKVLGHRRRAV 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,480
Number of Sequences: 336
Number of extensions: 3092
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)