Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D16
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   2.6  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   5.9  

>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 265 SSNMIDLEGKHKFILALFTKKKQLFN 188
           SS   D EG H  IL+  TK  QLFN
Sbjct: 410 SSGHNDNEGNHSLILSSKTKSPQLFN 435


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +1

Query: 253  SYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLP 432
            SY+  + QE  + P ++    ++++F+  W +  V   L  I     L    WE+  N+P
Sbjct: 2078 SYIDRSMQECHSFPHEVYPLGLIAVFS--WPLALVM-LLFAILLIFGLPDYYWESPGNIP 2134

Query: 433  SFYIFNHRGKALSYDYVPT 489
            +FY    R K + + +V T
Sbjct: 2135 AFYTALLRRKLVLWFFVAT 2153


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +1

Query: 232 YVCLLDRSYLRITSQEFT---TLPLDI 303
           Y+C    SYLR+TS +FT   TL LDI
Sbjct: 173 YIC--STSYLRMTSSDFTTADTLVLDI 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,264
Number of Sequences: 5004
Number of extensions: 48463
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)